CAZyme3D

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Entry ID

Information for CAZyme ID: ALA59770.1

Basic Information

GenBank IDALA59770.1
FamilyGT2
Sequence Length319
UniProt IDA0A0K2GFN1(100,100)Download
Average pLDDT?81.53
CAZy50 ID131698
CAZy50 RepNo, UBF28179.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID42253
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira moscoviensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIQRTKPLIS  VVVPAYNEQD  NLPELYRRVT  DVFEKLDVDL  ELLIIDDASS  DGTLNWLRKT60
GREDRRLRFV  SFSRNFGHQA  GVTAGLQHAM  GDAVVVIDAD  LQDPPEVLPQ  MIQRWREGYQ120
IVMGQRIQRE  GDPLAKRLFA  WGYYRVLARL  SKVKIPVDGG  DFCLMDRVVV  DTLNRLPERN180
RYVRGLRAWV  GFRQTNQPFQ  RHARFKGEPK  YNFFKSLSLA  MDGLVSFSYL  PLRLATYVGL240
AAGAMALIMV  VLVLYWRFFT  NAPLVGYAIL  VTTFLCIASV  QLLTIGIMGE  YVGRIYDEVK300
GRPHYIVKET  NQDLDASKS319

Predicted 3D structure by AlphaFold2 with pLDDT = 81.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(10-171)

MIQRTKPLIS  VVVPAYNEQD  NLPELYRRVT  DVFEKLDVDL  ELLIIDDASS  DGTLNWLRKT60
GREDRRLRFV  SFSRNFGHQA  GVTAGLQHAM  GDAVVVIDAD  LQDPPEVLPQ  MIQRWREGYQ120
IVMGQRIQRE  GDPLAKRLFA  WGYYRVLARL  SKVKIPVDGG  DFCLMDRVVV  DTLNRLPERN180
RYVRGLRAWV  GFRQTNQPFQ  RHARFKGEPK  YNFFKSLSLA  MDGLVSFSYL  PLRLATYVGL240
AAGAMALIMV  VLVLYWRFFT  NAPLVGYAIL  VTTFLCIASV  QLLTIGIMGE  YVGRIYDEVK300
GRPHYIVKET  NQDLDASKS319

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help