CAZyme3D

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Entry ID

Information for CAZyme ID: ALA59236.1

Basic Information

GenBank IDALA59236.1
FamilyGH2
Sequence Length611
UniProt IDA0A0K2GE56(100,100)Download
Average pLDDT?90.97
CAZy50 ID45843
CAZy50 RepNo, QYO62738.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID42253
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira moscoviensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTREEDCEEG  RIGYPRPELR  RTDWLCLNGE  WDFSIDPYGV  WEHPSEVVWR  RTIAVPFAPE60
TPASGIEEQG  FFRACWYRRS  IAPPKLRPGE  RWMLHFGAVD  YLATVWLGGR  CLGSHEGGYT120
PFSFDVTDLL  QGPGRGTESR  DLVVRAVDLP  DDLQQPRGKQ  DWQREPHLIW  YPRTTGIWQT180
VWLERLPATY  IADVRYTPNL  SRWEIGLYVG  TAGREAEGAK  IRATLKVGGR  LLAEDVYSVS240
IGEVHRRIAL  SDPGIDDSRN  QLLWSPGSPT  LIDVRLELLS  KHGDVIDTVD  SYAALREVAI300
QGDRVTLNGR  AVQLRMVLDQ  GYWPDTGMTP  PDDAALRRDV  ELAKLMGFNG  VRKHQKIEDP360
RYLYWADRLG  LLVWEEMPSA  YRFTRKSVER  VKLQWEEILR  RDYNHPCIMA  WVPFNESWGV420
PNLPDNEPER  HYVQALYHLT  KTLDPTRPVV  GNDGWESVAT  DIIGIHDYDD  DPHRMARRYE480
TTDMRVRLFQ  HERPGGRILL  LQGGSPHADH  PIVLSEFGGI  AIQGDERTWG  YSRSETADDL540
ERRYVDLLHV  VHDLQLLAGF  CYTQFADTYQ  EANGLLYADR  RPKFPIERIA  EATRGRQWRA600
AQELTPGGPA  A611

Predicted 3D structure by AlphaFold2 with pLDDT = 90.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(20-516)

MTREEDCEEG  RIGYPRPELR  RTDWLCLNGE  WDFSIDPYGV  WEHPSEVVWR  RTIAVPFAPE60
TPASGIEEQG  FFRACWYRRS  IAPPKLRPGE  RWMLHFGAVD  YLATVWLGGR  CLGSHEGGYT120
PFSFDVTDLL  QGPGRGTESR  DLVVRAVDLP  DDLQQPRGKQ  DWQREPHLIW  YPRTTGIWQT180
VWLERLPATY  IADVRYTPNL  SRWEIGLYVG  TAGREAEGAK  IRATLKVGGR  LLAEDVYSVS240
IGEVHRRIAL  SDPGIDDSRN  QLLWSPGSPT  LIDVRLELLS  KHGDVIDTVD  SYAALREVAI300
QGDRVTLNGR  AVQLRMVLDQ  GYWPDTGMTP  PDDAALRRDV  ELAKLMGFNG  VRKHQKIEDP360
RYLYWADRLG  LLVWEEMPSA  YRFTRKSVER  VKLQWEEILR  RDYNHPCIMA  WVPFNESWGV420
PNLPDNEPER  HYVQALYHLT  KTLDPTRPVV  GNDGWESVAT  DIIGIHDYDD  DPHRMARRYE480
TTDMRVRLFQ  HERPGGRILL  LQGGSPHADH  PIVLSEFGGI  AIQGDERTWG  YSRSETADDL540
ERRYVDLLHV  VHDLQLLAGF  CYTQFADTYQ  EANGLLYADR  RPKFPIERIA  EATRGRQWRA600
AQELTPGGPA  A611

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help