CAZyme3D

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Entry ID

Information for CAZyme ID: ALA40995.1

Basic Information

GenBank IDALA40995.1
FamilyCBM36, CE4
Sequence Length357
UniProt IDA0A0K2F5R4(100,100)Download
Average pLDDT?86.08
CAZy50 ID121736
CAZy50 RepNo, AIQ23977.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID59893
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus peoriae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFIAKAGKWT  AIMSITLSLF  TGSLVISSNQ  ALAADCSSGY  VALTFDDGPN  PSNTKALLSA60
LKQNGLRATL  FNLGQNVQNN  PSLVRDQQAA  GMWIGNHSWS  HPHMTQLSTS  QMSSEITRTQ120
QTIQSITGTV  PKLFRPPYGE  TNATLKSIET  QNGLTEVLWN  VDSQDWNGAS  TAQIVAAAGK180
LKNGDVILMH  DQYQTTLQAI  PQIAQNLKNR  NLCSGMISPS  NGRAVAPDGG  NGETPPNKGT240
KVEAENMTKG  GQYTSNISSP  FNGVALYSNN  DSVKFTQNFT  SGTHSFSLRG  ASNNSNMAKV300
DLKIGGQTKG  TFYFGGSSPA  VYTLNNVSHG  TGNQEIELVV  TADDGTWDAY  IDYLEII357

Predicted 3D structure by AlphaFold2 with pLDDT = 86.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(39-154)+CBM36(243-356)

MFIAKAGKWT  AIMSITLSLF  TGSLVISSNQ  ALAADCSSGY  VALTFDDGPN  PSNTKALLSA60
LKQNGLRATL  FNLGQNVQNN  PSLVRDQQAA  GMWIGNHSWS  HPHMTQLSTS  QMSSEITRTQ120
QTIQSITGTV  PKLFRPPYGE  TNATLKSIET  QNGLTEVLWN  VDSQDWNGAS  TAQIVAAAGK180
LKNGDVILMH  DQYQTTLQAI  PQIAQNLKNR  NLCSGMISPS  NGRAVAPDGG  NGETPPNKGT240
KVEAENMTKG  GQYTSNISSP  FNGVALYSNN  DSVKFTQNFT  SGTHSFSLRG  ASNNSNMAKV300
DLKIGGQTKG  TFYFGGSSPA  VYTLNNVSHG  TGNQEIELVV  TADDGTWDAY  IDYLEII357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help