CAZyme3D

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Entry ID

Information for CAZyme ID: AKS23041.1

Basic Information

GenBank IDAKS23041.1
FamilyGT2
Sequence Length329
UniProt IDA0A0K0WKX5(100,100)Download
Average pLDDT?92.84
CAZy50 ID142486
CAZy50 RepNo, AFS53014.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1660083
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusLeptospirillum
SpeciesLeptospirillum sp. Group II 'CF-1'

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDGTRVARNT  EKVFVVLVTY  NRKDLLLECL  DGLLRQTRPI  DGLVLIDNAS  TDGTADALYA60
QKFLPEVPPL  NARSVWEFRR  ESLREGEMTF  VYLRLPVNEG  GSGGFHEGVK  KALEFDCDWL120
WMMDDDVEPD  EGCLQGQLAF  SEISKCIHPR  KYFQDGLAHE  WEGYISAVTG  RRVFQPDISF180
RKGFSFCTIN  TGCFEGMLIH  RSVVEKIGLP  DKRFFLGGDD  SVYGFLAHYH  TPVLYLRDPR240
INKKKIYQVE  NNPIGDRSIY  YGMRNTFLMQ  RYLNEKMERY  RLIRSFFILV  RFVDYALNIL300
QNRPEKFRGY  RVLMRAFRDG  LTGNFGKGL329

Predicted 3D structure by AlphaFold2 with pLDDT = 92.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(15-208)

MDGTRVARNT  EKVFVVLVTY  NRKDLLLECL  DGLLRQTRPI  DGLVLIDNAS  TDGTADALYA60
QKFLPEVPPL  NARSVWEFRR  ESLREGEMTF  VYLRLPVNEG  GSGGFHEGVK  KALEFDCDWL120
WMMDDDVEPD  EGCLQGQLAF  SEISKCIHPR  KYFQDGLAHE  WEGYISAVTG  RRVFQPDISF180
RKGFSFCTIN  TGCFEGMLIH  RSVVEKIGLP  DKRFFLGGDD  SVYGFLAHYH  TPVLYLRDPR240
INKKKIYQVE  NNPIGDRSIY  YGMRNTFLMQ  RYLNEKMERY  RLIRSFFILV  RFVDYALNIL300
QNRPEKFRGY  RVLMRAFRDG  LTGNFGKGL329

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help