CAZyme3D

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Entry ID

Information for CAZyme ID: AKP45419.1

Basic Information

GenBank IDAKP45419.1
FamilyCBM50, GH18
Sequence Length428
UniProt IDA0A0H4NVA7(100,100)Download
Average pLDDT?96.82
CAZy50 ID80301
CAZy50 RepNo, AHN23468.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1479
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus smithii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQIHVVRQNE  TLTSIAREYN  INANAIETAN  QLPNPDHLVI  GQAIVIPTSG  SFYTVRRGDS60
LWSISRRYGL  SPEELARVNG  ISVNTVLREG  LRLFIPPSRK  RNAEFNAYVE  PFGTSVSPEL120
ESSAREAAPY  LTFLSPFSFR  AKRDGTLDTP  PLGNLAAIAS  QNRNILVMVI  TNQEQGQFSA180
ELGQILLNDQ  QIQNRFLQNI  ISLSNRYHFR  DIHFDFEYLR  PEDREAYNQF  LRKAKDLFSR240
QGWFISTALA  PKTSADQKGR  WYEGHDYKAH  GAIVDFVVIM  TYEWGYSGGP  PMAVSPIEPV300
RQVLQYAVSE  IPSQKILMGQ  NLYGYDWTLP  FVPGRDTAKA  ISPQQAILLA  VKYNAAIQYD360
QQAQAPYIDY  IDEQNRRHKV  WFEDARSIQA  KFDLVKELNL  KGMSYWKLGL  SFPQNWLLLA420
DNFNPVKK428

Predicted 3D structure by AlphaFold2 with pLDDT = 96.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(4-47)+CBM50(53-96)+GH18(146-409)

MQIHVVRQNE  TLTSIAREYN  INANAIETAN  QLPNPDHLVI  GQAIVIPTSG  SFYTVRRGDS60
LWSISRRYGL  SPEELARVNG  ISVNTVLREG  LRLFIPPSRK  RNAEFNAYVE  PFGTSVSPEL120
ESSAREAAPY  LTFLSPFSFR  AKRDGTLDTP  PLGNLAAIAS  QNRNILVMVI  TNQEQGQFSA180
ELGQILLNDQ  QIQNRFLQNI  ISLSNRYHFR  DIHFDFEYLR  PEDREAYNQF  LRKAKDLFSR240
QGWFISTALA  PKTSADQKGR  WYEGHDYKAH  GAIVDFVVIM  TYEWGYSGGP  PMAVSPIEPV300
RQVLQYAVSE  IPSQKILMGQ  NLYGYDWTLP  FVPGRDTAKA  ISPQQAILLA  VKYNAAIQYD360
QQAQAPYIDY  IDEQNRRHKV  WFEDARSIQA  KFDLVKELNL  KGMSYWKLGL  SFPQNWLLLA420
DNFNPVKK428

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help