CAZyme3D

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Entry ID

Information for CAZyme ID: AKN71647.1

Basic Information

GenBank IDAKN71647.1
FamilyCBM50
Sequence Length358
UniProt IDA0A0H4C6M2(100,100)Download
Average pLDDT?60.40
CAZy50 ID108725
CAZy50 RepNo, QKW27925.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1577075
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. PBH53

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSGNGRHRR  PRQAPALLVA  AGVTGSAIAI  PLLGAASANA  ADGTTWDKVA  ECESGGSWSA60
DPGNGYYGGL  QISLEDWNAY  GGGQYAASPD  QASRNQQIAV  AEKILADKGT  SPWATCALLS120
GLTTDSGSVD  VDTGVDGSDD  KGGSGDSSGS  ANKSDNSDKG  DSSGSSGDSG  SSGVPGSSPS180
AGGDAGANSG  SGSGSSADPT  TEPGGKPGEG  AGKGTGSTGT  DTPKSDKSTS  PATGDAQEAT240
GSPSATPGTG  AESNPQHAAG  SWSLVDTGAL  GGGRHRGASA  DESVTNGQNT  ASSGRHASRE300
ADTYTVREGD  SLASIADSLE  VDGGWRALYA  DNKKAIGSDP  NRISAGQTLE  VEDETGTK358

Predicted 3D structure by AlphaFold2 with pLDDT = 60.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(304-350)

MLSGNGRHRR  PRQAPALLVA  AGVTGSAIAI  PLLGAASANA  ADGTTWDKVA  ECESGGSWSA60
DPGNGYYGGL  QISLEDWNAY  GGGQYAASPD  QASRNQQIAV  AEKILADKGT  SPWATCALLS120
GLTTDSGSVD  VDTGVDGSDD  KGGSGDSSGS  ANKSDNSDKG  DSSGSSGDSG  SSGVPGSSPS180
AGGDAGANSG  SGSGSSADPT  TEPGGKPGEG  AGKGTGSTGT  DTPKSDKSTS  PATGDAQEAT240
GSPSATPGTG  AESNPQHAAG  SWSLVDTGAL  GGGRHRGASA  DESVTNGQNT  ASSGRHASRE300
ADTYTVREGD  SLASIADSLE  VDGGWRALYA  DNKKAIGSDP  NRISAGQTLE  VEDETGTK358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help