CAZyme3D

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Entry ID

Information for CAZyme ID: AKE60614.1

Basic Information

GenBank IDAKE60614.1
FamilyGT52
Sequence Length313
UniProt IDA0A0F6TXH7(100,100)Download
Average pLDDT?90.58
CAZy50 ID149930
CAZy50 RepNo, CAQ91354.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1261127
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFLFICMTNL  QLLIAKAIIE  KERLDNVELL  FIGDVKNEKN  IYYINKIKPL  CQHVSLEVCA60
KKTSICKTLK  RTWYAKKIMT  PYKKKYDIVF  FANYHVPLIH  HILSVISFNE  IRTFDDGTNN120
INKKSMMYQD  SPVKPLSKNI  RRLLGRKYHK  KDILNFDKKH  YTLFPGKSNI  IERTEAIKLI180
DYYSETSGSH  VVKKVLLGTV  YSDAINKKHK  VDELIQKIQN  FINSKKIDLY  IPHPRELSYK240
FDNVENINSQ  LIAEDILLNL  LQQGFRLELY  GFNTTVQINL  ENIACVENYN  IKSSLLKECF300
NQHLGFDFNN  IEL313

Predicted 3D structure by AlphaFold2 with pLDDT = 90.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(26-293)

MFLFICMTNL  QLLIAKAIIE  KERLDNVELL  FIGDVKNEKN  IYYINKIKPL  CQHVSLEVCA60
KKTSICKTLK  RTWYAKKIMT  PYKKKYDIVF  FANYHVPLIH  HILSVISFNE  IRTFDDGTNN120
INKKSMMYQD  SPVKPLSKNI  RRLLGRKYHK  KDILNFDKKH  YTLFPGKSNI  IERTEAIKLI180
DYYSETSGSH  VVKKVLLGTV  YSDAINKKHK  VDELIQKIQN  FINSKKIDLY  IPHPRELSYK240
FDNVENINSQ  LIAEDILLNL  LQQGFRLELY  GFNTTVQINL  ENIACVENYN  IKSSLLKECF300
NQHLGFDFNN  IEL313

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help