CAZyme3D

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Entry ID

Information for CAZyme ID: AKC61948.1

Basic Information

GenBank IDAKC61948.1
FamilyCBM50, GH18
Sequence Length504
UniProt IDA0A7X5SZ70(100,100)Download
Average pLDDT?93.39
CAZy50 ID50810
CAZy50 RepNo, AZV44884.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1509
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sporogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWRQPNISYI  VKPGDSLFTI  ARSYGITVEQ  LKEYNRLVSN  DLYVGQQIFI  PISIYRVQRG60
DSLYSIAKKF  NTTVESLMVL  NNLDSINLSI  GQILYIPIYT  EAIMKVEDGN  IRSRPDINSQ120
VLYKMDKGTK  LPIINVYDDF  YAIKLFNGNE  GFVSKTIVDF  KTYGNMKPVV  AVDGFYTLEE180
GETLPSSYES  FVTNRNLISE  ICLFMFRIDP  NDATLIEKFG  DFTDDYVREL  VNIAHRNNIR240
ILAVVHNLLY  RPGGTTKAKD  LVKELVSTRE  NRQIFINNLI  NLIEKYNFDG  VNIDIEDVYI300
EDKDRLSSLY  LEMGRELRRK  GYYLSASIPA  RVSDEPFNPF  SDPFDYRIIG  SAVDEFIVML360
YNEHGWPGSG  PGPVVSIGWM  NRVLNYTITR  VPRNKVVAAV  SVFGFDFNLT  TGRNTYVTYS420
GAVEIANRYG  KDIIFDEETK  TPMFSYIDEI  GNNHEVWFEN  AESIYAKAEL  AFNKGIKGIA480
LWRLGMEDEK  IWDSMKKDIV  VKMA504

Predicted 3D structure by AlphaFold2 with pLDDT = 93.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(9-51)+CBM50(55-97)+GH18(214-490)

MWRQPNISYI  VKPGDSLFTI  ARSYGITVEQ  LKEYNRLVSN  DLYVGQQIFI  PISIYRVQRG60
DSLYSIAKKF  NTTVESLMVL  NNLDSINLSI  GQILYIPIYT  EAIMKVEDGN  IRSRPDINSQ120
VLYKMDKGTK  LPIINVYDDF  YAIKLFNGNE  GFVSKTIVDF  KTYGNMKPVV  AVDGFYTLEE180
GETLPSSYES  FVTNRNLISE  ICLFMFRIDP  NDATLIEKFG  DFTDDYVREL  VNIAHRNNIR240
ILAVVHNLLY  RPGGTTKAKD  LVKELVSTRE  NRQIFINNLI  NLIEKYNFDG  VNIDIEDVYI300
EDKDRLSSLY  LEMGRELRRK  GYYLSASIPA  RVSDEPFNPF  SDPFDYRIIG  SAVDEFIVML360
YNEHGWPGSG  PGPVVSIGWM  NRVLNYTITR  VPRNKVVAAV  SVFGFDFNLT  TGRNTYVTYS420
GAVEIANRYG  KDIIFDEETK  TPMFSYIDEI  GNNHEVWFEN  AESIYAKAEL  AFNKGIKGIA480
LWRLGMEDEK  IWDSMKKDIV  VKMA504

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help