CAZyme3D

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Entry ID

Information for CAZyme ID: AKC55766.1

Basic Information

GenBank IDAKC55766.1
FamilyCBM43, GH17
Sequence Length233
UniProt IDA0A0F6PS59(100,100)Download
Average pLDDT?82.11
CAZy50 ID68272
CAZy50 RepNo, BBH02645.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID224740
KingdomEukaryota
PhylumStreptophyta
ClassPinopsida
OrderCupressales
FamilyCupressaceae
GenusJuniperus
SpeciesJuniperus sabina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

APFMVNAYPY  FAYRDNPKEV  SLDYVLFGQS  PGVKDPKGFT  YNNMLDAQID  SVYSAMAALG60
HNDSIPVSVS  ETGWPSKGDP  ADIGVTPENA  KNYNSRVIKH  VTSNAGTPMR  PNRVVDTYIF120
ALFNENQKPG  PTTERNFGLL  QPDGSKVYDI  DLSCGYCGAA  APAPAPPPPA  PLPMQWSRPA180
NAGRQPGAIW  CIAKPSADPS  VLQESLDFSC  GQGGADCGAI  RQGGPCYSPN  TVH233

Predicted 3D structure by AlphaFold2 with pLDDT = 82.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(1-151)+CBM43(190-232)

APFMVNAYPY  FAYRDNPKEV  SLDYVLFGQS  PGVKDPKGFT  YNNMLDAQID  SVYSAMAALG60
HNDSIPVSVS  ETGWPSKGDP  ADIGVTPENA  KNYNSRVIKH  VTSNAGTPMR  PNRVVDTYIF120
ALFNENQKPG  PTTERNFGLL  QPDGSKVYDI  DLSCGYCGAA  APAPAPPPPA  PLPMQWSRPA180
NAGRQPGAIW  CIAKPSADPS  VLQESLDFSC  GQGGADCGAI  RQGGPCYSPN  TVH233

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help