CAZyme3D

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Entry ID

Information for CAZyme ID: AKB78133.1

Basic Information

GenBank IDAKB78133.1
FamilyGH133
Sequence Length659
UniProt IDA0A0E3SF82(100,100)Download
Average pLDDT?94.33
CAZy50 ID39709
CAZy50 RepNo, AKB81200.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1434110
KingdomArchaea
PhylumEuryarchaeota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina horonobensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSEGRFGADF  LSTYEEGIKR  EWVTGNGLGG  YASSTVIGAG  TRTYHGLLVA  ASENPPGRFL60
FLSSLDEEIS  INEEIYKLAA  HKYPDIISPE  GFNYLSEFIP  NPFPLWVYQP  GDFTVKKKVF120
MVHNSNTTCI  LYDITSRKEG  AMLRIYPLVN  SRDFHYTIRS  GYLSFSQKTN  PAGVELESSN180
GFIFSLSSNL  EYHADPKWYY  NLEYDIEKQR  ACNFEEDDFT  PGYFESKLEP  GTSHFFIAAS240
TGDISSFTLE  HVDELYSREA  NRQNLLALNS  KLTEPFALKL  LKATDLFIVK  HPSSGENTVI300
AGYHWYSDWG  RDAMISLPGL  FLIPYRFKEA  RSALEYFSRH  SRKGLIPNTY  SSFGGEPVYN360
AVDASLWFIH  ALCRYFAYTK  DFLFLTDIWD  TVDNIIDNYR  NGTDFGIGMD  SDYLIKQGPQ420
LTWMDAKIGE  WAVTPRAGKA  CEINALWYNA  LKTASYLGTL  LGKDTSLYET  LAAGVASNFE480
NVFWNPEANC  LFDLVYQDEA  GNQIKDPAIR  PNQIFAVSLP  YTMLSPEKER  TIVDRVKSDL540
LTPFGLRTLS  RDHLLYKGQY  RGDALTRDTA  YHNGTVWPWL  LGAYVKAYRK  VNNYSESSLE600
DMKALLQGFD  IHLETAGIGT  ISEVFDGDYP  HSPGGTIAQA  WSVAEILRAY  VEDIIEIKP659

Predicted 3D structure by AlphaFold2 with pLDDT = 94.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(293-648)

MSEGRFGADF  LSTYEEGIKR  EWVTGNGLGG  YASSTVIGAG  TRTYHGLLVA  ASENPPGRFL60
FLSSLDEEIS  INEEIYKLAA  HKYPDIISPE  GFNYLSEFIP  NPFPLWVYQP  GDFTVKKKVF120
MVHNSNTTCI  LYDITSRKEG  AMLRIYPLVN  SRDFHYTIRS  GYLSFSQKTN  PAGVELESSN180
GFIFSLSSNL  EYHADPKWYY  NLEYDIEKQR  ACNFEEDDFT  PGYFESKLEP  GTSHFFIAAS240
TGDISSFTLE  HVDELYSREA  NRQNLLALNS  KLTEPFALKL  LKATDLFIVK  HPSSGENTVI300
AGYHWYSDWG  RDAMISLPGL  FLIPYRFKEA  RSALEYFSRH  SRKGLIPNTY  SSFGGEPVYN360
AVDASLWFIH  ALCRYFAYTK  DFLFLTDIWD  TVDNIIDNYR  NGTDFGIGMD  SDYLIKQGPQ420
LTWMDAKIGE  WAVTPRAGKA  CEINALWYNA  LKTASYLGTL  LGKDTSLYET  LAAGVASNFE480
NVFWNPEANC  LFDLVYQDEA  GNQIKDPAIR  PNQIFAVSLP  YTMLSPEKER  TIVDRVKSDL540
LTPFGLRTLS  RDHLLYKGQY  RGDALTRDTA  YHNGTVWPWL  LGAYVKAYRK  VNNYSESSLE600
DMKALLQGFD  IHLETAGIGT  ISEVFDGDYP  HSPGGTIAQA  WSVAEILRAY  VEDIIEIKP659

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help