CAZyme3D

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Entry ID

Information for CAZyme ID: AJS61216.1

Basic Information

GenBank IDAJS61216.1
FamilyGH130
Sequence Length353
UniProt IDA0A0D3VHY6(100,100)Download
Average pLDDT?96.91
CAZy50 ID121901
CAZy50 RepNo, UMV47996.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1566358
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. IHBB 10380

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNIYRYEENP  IITPADVTPY  HPNFEVIGAF  NAGIAQYNGE  VLMLLRVAER  PISEDPQIVK60
APIYNPKTQE  LELIELRTDD  ERYDFSDPRV  IRDRTGSSGF  AYLTSISYIR  IARSKDGHHF120
TIDEKPFVYP  SNEQETFGIE  DPRVTQMGDT  YYIYFSVISP  VGIGESMVST  KDFVNIEHHG180
MIFSPENKDV  IIFPEKINGK  YYALHRPTTK  SIGNPEIWIA  ESNNLLYWGN  HKHLMGLRKG240
MWDSGRIGGG  AVPFKTDKGW  LELYHGATLD  HRYCMGAVLL  DLNDPTKIIA  RSDKPVMEPD300
ADYEKKGFFG  DVVFSCGVIV  EGDIVKMYYG  VADTSMACAE  LSLQEILDSL  IYV353

Predicted 3D structure by AlphaFold2 with pLDDT = 96.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(4-349)

MNIYRYEENP  IITPADVTPY  HPNFEVIGAF  NAGIAQYNGE  VLMLLRVAER  PISEDPQIVK60
APIYNPKTQE  LELIELRTDD  ERYDFSDPRV  IRDRTGSSGF  AYLTSISYIR  IARSKDGHHF120
TIDEKPFVYP  SNEQETFGIE  DPRVTQMGDT  YYIYFSVISP  VGIGESMVST  KDFVNIEHHG180
MIFSPENKDV  IIFPEKINGK  YYALHRPTTK  SIGNPEIWIA  ESNNLLYWGN  HKHLMGLRKG240
MWDSGRIGGG  AVPFKTDKGW  LELYHGATLD  HRYCMGAVLL  DLNDPTKIIA  RSDKPVMEPD300
ADYEKKGFFG  DVVFSCGVIV  EGDIVKMYYG  VADTSMACAE  LSLQEILDSL  IYV353

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help