CAZyme3D

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Entry ID

Information for CAZyme ID: AJR02281.1

Basic Information

GenBank IDAJR02281.1
FamilyGT28
Sequence Length368
UniProt IDA0A0C5VSV2(100,100)Download
Average pLDDT?92.97
CAZy50 ID86338
CAZy50 RepNo, AYB29261.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1454006
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSiansivirga
SpeciesSiansivirga zeaxanthinifaciens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNNKTYKII  LSGGGTGGHI  YPAIAIANEL  KSRFPDAEFL  FVGANDRMEM  EKVPQAGYAI60
KGLWIAGLQR  KLTAKNLMFP  FKLLSSLWTA  RNIVKSFNPD  VVIGTGGYAS  GPLLYAAALG120
KVPSLIQEQN  SYPGITNKLL  SKKVQKICVA  YDGLERFFPK  DKIIKTGNPV  RKGLLEVDNK180
TVEAKNFFNL  KHGKYTLLVL  GGSLGARRVN  ELIEKELDFL  DTQNVQVIWQ  CGKLYYQQYK240
IYNNTNNVQV  HEFLNNMDLA  YAAADIVISR  AGASSVSELC  IVGKPVIFIP  SPNVAEDHQT300
KNAMAVVDKN  AALIINENEL  DVDFENVFSK  LIASPDKQKE  LGANIKKLAL  VNATNDIVDE360
VEKLLKSN368

Predicted 3D structure by AlphaFold2 with pLDDT = 92.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(196-350)

MKNNKTYKII  LSGGGTGGHI  YPAIAIANEL  KSRFPDAEFL  FVGANDRMEM  EKVPQAGYAI60
KGLWIAGLQR  KLTAKNLMFP  FKLLSSLWTA  RNIVKSFNPD  VVIGTGGYAS  GPLLYAAALG120
KVPSLIQEQN  SYPGITNKLL  SKKVQKICVA  YDGLERFFPK  DKIIKTGNPV  RKGLLEVDNK180
TVEAKNFFNL  KHGKYTLLVL  GGSLGARRVN  ELIEKELDFL  DTQNVQVIWQ  CGKLYYQQYK240
IYNNTNNVQV  HEFLNNMDLA  YAAADIVISR  AGASSVSELC  IVGKPVIFIP  SPNVAEDHQT300
KNAMAVVDKN  AALIINENEL  DVDFENVFSK  LIASPDKQKE  LGANIKKLAL  VNATNDIVDE360
VEKLLKSN368

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help