CAZyme3D

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Entry ID

Information for CAZyme ID: AJP74478.1

Basic Information

GenBank IDAJP74478.1
FamilyPL10_1
Sequence Length374
UniProt IDA0A7U5CV18(100,100)Download
Average pLDDT?93.64
CAZy50 ID79242
CAZy50 RepNo, AEU36651.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1609977
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas hengshuiensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRADKAALRA  ERAALTGPVP  ERAHDGKTAG  MPLDRAPEWY  ASEAALRVAR  NIVSFQTPAG60
GWGKNVNRDA  PPRAPGEGYV  AGLDPSGKAG  GPRAIDDDGW  SYVGTIDNDA  TTTELRFLAR120
VQAQFPGAAG  DGYRAAFEKG  VRYLLAAQFP  NGGWPQVYPL  QGGYHDALTF  NDGAVADVAT180
LMLSVAARAG  DYGFVAAALA  EAARVSAERA  CAVIVQTQVR  IGGKPTIWGQ  QHDALTLAPA240
GARNFEPIAV  SSGESAGLLL  FLMRLKDPSP  GVVAAVRDGV  AWLDAHALHD  VAWVVDPARG300
GRRLVAQPGA  APLWPRYYEI  PTARAIFGDR  DRSIHDSVDE  ISEERRNGYA  WFVTEPRKAI360
EAYAKWSAKH  ASPQ374

Predicted 3D structure by AlphaFold2 with pLDDT = 93.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_1(56-358)

MRADKAALRA  ERAALTGPVP  ERAHDGKTAG  MPLDRAPEWY  ASEAALRVAR  NIVSFQTPAG60
GWGKNVNRDA  PPRAPGEGYV  AGLDPSGKAG  GPRAIDDDGW  SYVGTIDNDA  TTTELRFLAR120
VQAQFPGAAG  DGYRAAFEKG  VRYLLAAQFP  NGGWPQVYPL  QGGYHDALTF  NDGAVADVAT180
LMLSVAARAG  DYGFVAAALA  EAARVSAERA  CAVIVQTQVR  IGGKPTIWGQ  QHDALTLAPA240
GARNFEPIAV  SSGESAGLLL  FLMRLKDPSP  GVVAAVRDGV  AWLDAHALHD  VAWVVDPARG300
GRRLVAQPGA  APLWPRYYEI  PTARAIFGDR  DRSIHDSVDE  ISEERRNGYA  WFVTEPRKAI360
EAYAKWSAKH  ASPQ374

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help