CAZyme3D

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Entry ID

Information for CAZyme ID: AJK49184.1

Basic Information

GenBank IDAJK49184.1
FamilyGH54
Sequence Length695
UniProt IDA0A0B6S446(100,100)Download
Average pLDDT?75.21
CAZy50 ID39002
CAZy50 RepNo, AWY55343.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID41899
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia plantarii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWKQNELTMA  LAAMTMTLAA  CNGDSGSAGS  QSLRETTPQN  TEATTGGAAT  GSAAATAAAL60
PCDALAAAGT  ACSAAHSVTR  LLTKHYTGPL  FRVLNLTTNA  RTNIFPYTAG  SGVAANLVGT120
TNLDAIKQAC  GSDASGCVVD  DIYDQIDLVA  PLQSAGQFGN  VAATLNVVNN  QAKTLTIDAT180
GQTVPVTGGF  AQLSLPNGNT  VTVQVHRPSV  NFPALVNNPT  PTNQAITIGN  DLPFAGDKSP240
SRIRFVPVPG  GRTTVALDIV  AHQSYRNRIG  TVNQSIGDTE  IAEYMVAGTN  LPAGSTSACC300
GTYGNMEDNS  SGTFQGSGTV  PPSGASIPGD  PVMVDANGAK  GQIEGMMFGL  AYASGNAAVF360
GYGPGYKNGG  PTYSANDTGV  NWPGVDAEAG  VYLYGPKQPL  TEGFVTVLAK  YSPQTQANHF420
AVKGGDASQA  VLTSVYSGVP  PEAVDFFGDT  GHRFLGRWEG  GLSLGEGGDE  SDAPIEFYEG480
AIITKMSSDA  ADNAVQGSIQ  TFYGPPTDTT  AAACQAGNLA  TQPLALANTS  AWHPGAQGSV540
ISLTTDISGT  TNYAAVIGNA  SGSPFSEIDQ  WVKIQGGQTY  VFTDYLPAST  GQTIFPAFSV600
QTDDGNQTEF  AGVLNTNNGV  IVPGTWGAGG  STLSASKVGN  WWKVSMKFTA  PAGASNAHLF660
LDPRTSNASG  ARSTQSTSLN  LSATHYCPGL  SIAGS695

Predicted 3D structure by AlphaFold2 with pLDDT = 75.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH54(61-505)

MWKQNELTMA  LAAMTMTLAA  CNGDSGSAGS  QSLRETTPQN  TEATTGGAAT  GSAAATAAAL60
PCDALAAAGT  ACSAAHSVTR  LLTKHYTGPL  FRVLNLTTNA  RTNIFPYTAG  SGVAANLVGT120
TNLDAIKQAC  GSDASGCVVD  DIYDQIDLVA  PLQSAGQFGN  VAATLNVVNN  QAKTLTIDAT180
GQTVPVTGGF  AQLSLPNGNT  VTVQVHRPSV  NFPALVNNPT  PTNQAITIGN  DLPFAGDKSP240
SRIRFVPVPG  GRTTVALDIV  AHQSYRNRIG  TVNQSIGDTE  IAEYMVAGTN  LPAGSTSACC300
GTYGNMEDNS  SGTFQGSGTV  PPSGASIPGD  PVMVDANGAK  GQIEGMMFGL  AYASGNAAVF360
GYGPGYKNGG  PTYSANDTGV  NWPGVDAEAG  VYLYGPKQPL  TEGFVTVLAK  YSPQTQANHF420
AVKGGDASQA  VLTSVYSGVP  PEAVDFFGDT  GHRFLGRWEG  GLSLGEGGDE  SDAPIEFYEG480
AIITKMSSDA  ADNAVQGSIQ  TFYGPPTDTT  AAACQAGNLA  TQPLALANTS  AWHPGAQGSV540
ISLTTDISGT  TNYAAVIGNA  SGSPFSEIDQ  WVKIQGGQTY  VFTDYLPAST  GQTIFPAFSV600
QTDDGNQTEF  AGVLNTNNGV  IVPGTWGAGG  STLSASKVGN  WWKVSMKFTA  PAGASNAHLF660
LDPRTSNASG  ARSTQSTSLN  LSATHYCPGL  SIAGS695

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help