CAZyme3D

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Entry ID

Information for CAZyme ID: AJF66469.1

Basic Information

GenBank IDAJF66469.1
FamilyCBM35
Sequence Length320
UniProt IDA0A0B5IDN1(100,100)Download
Average pLDDT?67.26
CAZy50 ID132250
CAZy50 RepNo, WEH41145.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID362257
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces vietnamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAAGNDGASK  PEDDDPFGYL  YADGQAAGAQ  APQGGGYGYP  GPAPAQPGVP  RTSYNQVRAV60
GERQYGHQQQ  AYVPPQQQAP  YGQPQAQYAA  PETYGAQPQT  RTIPPQRGGG  GSGRGPNTKG120
LLIGAVSVVA  VVVIGIAAAV  ISNAGGEKDK  GDQAGGTPSS  APPATVSEQP  TTEPSAEKTP180
EELPKQDAAT  LTLGGSATTE  KTVQGAEGVG  GVYVSGFNTP  GASVTWKANM  PSGGKYRLTV240
RYSIPAVDAN  ATLTVNGKAN  SLPIGLKNFI  HSSDPNPEKN  WQTTWAPVDL  QKGDNEIKIS300
CEAGNQCNVL  LDWLEVTPGP  320

Predicted 3D structure by AlphaFold2 with pLDDT = 67.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(194-316)

MAAGNDGASK  PEDDDPFGYL  YADGQAAGAQ  APQGGGYGYP  GPAPAQPGVP  RTSYNQVRAV60
GERQYGHQQQ  AYVPPQQQAP  YGQPQAQYAA  PETYGAQPQT  RTIPPQRGGG  GSGRGPNTKG120
LLIGAVSVVA  VVVIGIAAAV  ISNAGGEKDK  GDQAGGTPSS  APPATVSEQP  TTEPSAEKTP180
EELPKQDAAT  LTLGGSATTE  KTVQGAEGVG  GVYVSGFNTP  GASVTWKANM  PSGGKYRLTV240
RYSIPAVDAN  ATLTVNGKAN  SLPIGLKNFI  HSSDPNPEKN  WQTTWAPVDL  QKGDNEIKIS300
CEAGNQCNVL  LDWLEVTPGP  320

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help