CAZyme3D

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Entry ID

Information for CAZyme ID: AJE21015.1

Basic Information

GenBank IDAJE21015.1
FamilyGH50
Sequence Length797
UniProt IDA0A0C4WND5(100,100)Download
Average pLDDT?88.22
CAZy50 ID23549
CAZy50 RepNo, SDT65454.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1328314
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusAzotobacter
SpeciesAzotobacter chroococcum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRPLVSLLF  ACCLVPLSAQ  AADEQVLFNF  VRPTDVVQVK  GEGAFLPELT  AESVAGGELL60
RRVTFNPQEG  PSLRLTPQQG  SWDWSGAGAV  SLRIQNAMDW  ALTLQVSIES  ADGKLLKTLV120
ALPAGPAQTL  VLPLHASSPR  AQGMRAAPPM  PWTHDNQRLL  VATSLEGEID  LRQVKAVTLS180
LEKPDVQQSI  LLGRFGVRED  LEPEVYRGIV  DAYGQYSRVE  WPEKITSDKQ  LKAAAEQEQA240
QLGRWLAERP  QLDRFGGWLK  GPQLEATGFF  RVARHEGRWY  LVTPEGHPFF  SLGVNTVSSG300
NSRTYIEGRE  GMFLDLPGKD  APLGAFYGAG  DSRQATGANG  GRQFAHGRWY  DFYRANLYRT360
YGQSCTPAGA  QAATEAEIVE  PERAPPEAPA  AEAPASPAAV  APVAGQPAAA  PPCVTQFFDA420
QRWRGHTLER  LQAWGFNTLG  NWSDLALGTM  RRVPYTIPLL  IRGDYATIST  GHDWWGGMPD480
PFDPRFAMAA  ERAIAIATRD  HRNNPWVVGY  FADNELSWAA  PGTDPKSRYA  LAYGTLRQTT540
DVPAKRAFLK  LLRDRYRNQQ  GLSAAWGIEL  PAWELMEDPG  FEAPLPSPEH  PAIEEDLQRF600
QQLFADTYFK  TIAESLKWHA  PDHLLLGGRF  AISTPEAVAA  CARYCDVLSF  NFYTREPQHG660
YDFEALRALD  KPVLVSEFHF  GSRDRGPFWG  GVAEVYKEEE  RGPAYAHFLE  RALAEPSIVG720
VHWFQYLDQP  VTGRLLDGEN  GHIGLVGVTD  RPFSGFVESV  RKANLKVGSL  LESAAAPAAG780
KPAAEGGARS  ETPAKAP797

Predicted 3D structure by AlphaFold2 with pLDDT = 88.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(76-767)

MIRPLVSLLF  ACCLVPLSAQ  AADEQVLFNF  VRPTDVVQVK  GEGAFLPELT  AESVAGGELL60
RRVTFNPQEG  PSLRLTPQQG  SWDWSGAGAV  SLRIQNAMDW  ALTLQVSIES  ADGKLLKTLV120
ALPAGPAQTL  VLPLHASSPR  AQGMRAAPPM  PWTHDNQRLL  VATSLEGEID  LRQVKAVTLS180
LEKPDVQQSI  LLGRFGVRED  LEPEVYRGIV  DAYGQYSRVE  WPEKITSDKQ  LKAAAEQEQA240
QLGRWLAERP  QLDRFGGWLK  GPQLEATGFF  RVARHEGRWY  LVTPEGHPFF  SLGVNTVSSG300
NSRTYIEGRE  GMFLDLPGKD  APLGAFYGAG  DSRQATGANG  GRQFAHGRWY  DFYRANLYRT360
YGQSCTPAGA  QAATEAEIVE  PERAPPEAPA  AEAPASPAAV  APVAGQPAAA  PPCVTQFFDA420
QRWRGHTLER  LQAWGFNTLG  NWSDLALGTM  RRVPYTIPLL  IRGDYATIST  GHDWWGGMPD480
PFDPRFAMAA  ERAIAIATRD  HRNNPWVVGY  FADNELSWAA  PGTDPKSRYA  LAYGTLRQTT540
DVPAKRAFLK  LLRDRYRNQQ  GLSAAWGIEL  PAWELMEDPG  FEAPLPSPEH  PAIEEDLQRF600
QQLFADTYFK  TIAESLKWHA  PDHLLLGGRF  AISTPEAVAA  CARYCDVLSF  NFYTREPQHG660
YDFEALRALD  KPVLVSEFHF  GSRDRGPFWG  GVAEVYKEEE  RGPAYAHFLE  RALAEPSIVG720
VHWFQYLDQP  VTGRLLDGEN  GHIGLVGVTD  RPFSGFVESV  RKANLKVGSL  LESAAAPAAG780
KPAAEGGARS  ETPAKAP797

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help