CAZyme3D

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Entry ID

Information for CAZyme ID: AJD45104.1

Basic Information

GenBank IDAJD45104.1
FamilyGT4
Sequence Length406
UniProt IDA0A0B4XAU0(100,100)Download
Average pLDDT?90.35
CAZy50 ID75075
CAZy50 RepNo, QRM56443.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1041138
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium gallicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSSYSRSLT  NFRLELLKSM  VRAGHVVVAA  GPEDDAEVKA  DLSKIGVEFA  TIPMARASLS60
PVRDIATFLQ  IRRLIKKIRP  DVVVPYTMKP  IVYGGIAARS  AGVPGRCFLV  TGLGHVFSEA120
SLRTLKGRWI  KRLCVRLYRL  AMAGARTVFV  YNDADRSDII  ENSLVHDVSV  IHRVAGSGVD180
VDHFAFAPAP  LEKPVFLLVA  RLIKDKGVFE  YVEAARRLKR  QRPNAEFQLL  GPFDPNPGAI240
SRLQVQEWIE  EGIVDYLGET  KDVRPFLANC  NIFVLPSYYR  EGIPRSILEA  MAVGRAIITT300
DLPGCRETIE  PGENGYLVMP  RSADSLLSAM  WPLADGLRLA  AEMGRRSREL  ACTRFNVHSI360
NEILIDRMGL  SNHDHAGREA  AGACGREADA  INQQLDATRR  VISWRG406

Predicted 3D structure by AlphaFold2 with pLDDT = 90.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(192-343)

MLSSYSRSLT  NFRLELLKSM  VRAGHVVVAA  GPEDDAEVKA  DLSKIGVEFA  TIPMARASLS60
PVRDIATFLQ  IRRLIKKIRP  DVVVPYTMKP  IVYGGIAARS  AGVPGRCFLV  TGLGHVFSEA120
SLRTLKGRWI  KRLCVRLYRL  AMAGARTVFV  YNDADRSDII  ENSLVHDVSV  IHRVAGSGVD180
VDHFAFAPAP  LEKPVFLLVA  RLIKDKGVFE  YVEAARRLKR  QRPNAEFQLL  GPFDPNPGAI240
SRLQVQEWIE  EGIVDYLGET  KDVRPFLANC  NIFVLPSYYR  EGIPRSILEA  MAVGRAIITT300
DLPGCRETIE  PGENGYLVMP  RSADSLLSAM  WPLADGLRLA  AEMGRRSREL  ACTRFNVHSI360
NEILIDRMGL  SNHDHAGREA  AGACGREADA  INQQLDATRR  VISWRG406

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help