CAZyme3D

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Entry ID

Information for CAZyme ID: AIZ16817.1

Basic Information

GenBank IDAIZ16817.1
FamilyGH13_3
Sequence Length724
UniProt IDA0A0A7I986(100,100)Download
Average pLDDT?89.16
CAZy50 ID23149
CAZy50 RepNo, AEK30925.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1447715
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium pseudolongum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAAMRETTGA  EERTQDQSTT  ATRTARKPRA  TARTRTKTSA  KASGAMPPTA  IAAKEPNLFG60
RITILDVRPD  AQDAVFPARV  ELGEPFTVSA  QVFLEGRATV  RATAVLKNPR  GRVMARVPMT120
QTNTGLDTWT  AMLQAGSPTD  LTPWDEGFAD  MLGQLGNWKV  AIEGWADTYT  DWVLDATARV180
NADAASADAE  GAIVRGSEIL  TRWAATRDAG  LDAAQRKVLR  ETAKQMLDAT  IPTAERLAIA240
QIDEIAALHT  TNPLRDGLTA  SRDRVFHVER  PKSSFSAWYQ  FFPRSEGAAV  NERGEMTPGT300
LRTAVSGLER  AKSEGFTIAY  LPAVFPVDHS  APDARLFAVG  TAAGGHDTVD  PELGSMDDFR360
AFCARAHELG  LEVALGLPLR  CAPTHPWVAA  HPEWFRRNAD  GSFVYALDEH  GDPEPFYELD420
FDNDLTGIER  EVERIIDVWI  EAGVTAFQID  EPQTEPVRFW  QDVLAAVTKK  HPEVLFLAEA480
FSRPALVRAL  AYAGFTQNHS  YFPWRNTKEE  LEAFLTETNG  EGGFYQHNTF  WPATPDVLSD540
YLRNNGVAGH  AVRAVLAAMG  SPSWGIYNGY  ELMENNVIAD  GASALGNERT  KVRARDWSGA600
VEYGIAELLT  SLNRIRAEHP  ATRSYHTLTV  LPSANPAIVA  FARQTPAQYT  ADGKPDTLLI660
VVNLDCYHEQ  QSSIHVDLNA  LGLPADRTYR  VRDLLTDRTF  DWSWDNFVSL  APWADVAHIL720
SVEY724

Predicted 3D structure by AlphaFold2 with pLDDT = 89.16 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_3(307-511)

MAAMRETTGA  EERTQDQSTT  ATRTARKPRA  TARTRTKTSA  KASGAMPPTA  IAAKEPNLFG60
RITILDVRPD  AQDAVFPARV  ELGEPFTVSA  QVFLEGRATV  RATAVLKNPR  GRVMARVPMT120
QTNTGLDTWT  AMLQAGSPTD  LTPWDEGFAD  MLGQLGNWKV  AIEGWADTYT  DWVLDATARV180
NADAASADAE  GAIVRGSEIL  TRWAATRDAG  LDAAQRKVLR  ETAKQMLDAT  IPTAERLAIA240
QIDEIAALHT  TNPLRDGLTA  SRDRVFHVER  PKSSFSAWYQ  FFPRSEGAAV  NERGEMTPGT300
LRTAVSGLER  AKSEGFTIAY  LPAVFPVDHS  APDARLFAVG  TAAGGHDTVD  PELGSMDDFR360
AFCARAHELG  LEVALGLPLR  CAPTHPWVAA  HPEWFRRNAD  GSFVYALDEH  GDPEPFYELD420
FDNDLTGIER  EVERIIDVWI  EAGVTAFQID  EPQTEPVRFW  QDVLAAVTKK  HPEVLFLAEA480
FSRPALVRAL  AYAGFTQNHS  YFPWRNTKEE  LEAFLTETNG  EGGFYQHNTF  WPATPDVLSD540
YLRNNGVAGH  AVRAVLAAMG  SPSWGIYNGY  ELMENNVIAD  GASALGNERT  KVRARDWSGA600
VEYGIAELLT  SLNRIRAEHP  ATRSYHTLTV  LPSANPAIVA  FARQTPAQYT  ADGKPDTLLI660
VVNLDCYHEQ  QSSIHVDLNA  LGLPADRTYR  VRDLLTDRTF  DWSWDNFVSL  APWADVAHIL720
SVEY724

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help