CAZyme3D

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Entry ID

Information for CAZyme ID: AIQ91758.1

Basic Information

GenBank IDAIQ91758.1
FamilyGT2
Sequence Length645
UniProt IDA0A089P116(100,100)Download
Average pLDDT?90.75
CAZy50 ID36253
CAZy50 RepNo, QGY06438.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID693986
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylobacterium
SpeciesMethylobacterium oryzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADPEYDRRL  VLPDHPVGWI  VLSYSGDPAA  PPRRPILRVL  RGPDDAVQDF  VLPGASQGLA60
HWLGLIPSDA  REIRLSAGAD  FALERVGARH  EAGVLAQSLL  RRPWRCLAAL  YERARGSDRR120
YRDILRGTCA  VTPMVRFPSW  AAARSRPAGL  PPSALRIGCL  LLARSGEAAV  LGAARDALAA180
QTHQPEWVSV  AWSGAPPPSE  DGPVSHRAWD  DAAGFDDLLR  DADALCLLRP  GDVLEPEALA240
LLAHTLSDAD  IAYGDAIGPD  GRPQLKPDWS  PDRALATGYP  GFPLLLSKTW  LSASPGRPVG300
PMEEIGLAIA  AAATTRAARV  AHVPRILART  VGDGLDASAR  AAALDARRSG  WPSLRAEIHD360
GAVHLKWPLP  DPAPLVSIVI  PSRDRLDLIT  RVCRGVLHET  AYAAIELIIV  DNGSTDPAVL420
DHYASLRDDP  RVRILMDPQP  FNFAAMVNAG  VGAASGAIVV  LLNNDVAVLE  PGWLEAMVRQ480
ACRPDVGAVG  AKLLYGDGTL  QHAGVVVGLG  GRAGHILRRR  PGDTPGHLGR  LRVAHEVSAV540
TAACLAVARD  KYLAVGGFDA  ESFPVDFNDV  DFCLRLGAAG  WKTVWTPAAT  LAHLESVSRG600
PSVGAKRTRF  EQEAARFSER  WRAVIRHDPF  YHPALSVTTF  GEDLE645

Predicted 3D structure by AlphaFold2 with pLDDT = 90.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(377-498)

MADPEYDRRL  VLPDHPVGWI  VLSYSGDPAA  PPRRPILRVL  RGPDDAVQDF  VLPGASQGLA60
HWLGLIPSDA  REIRLSAGAD  FALERVGARH  EAGVLAQSLL  RRPWRCLAAL  YERARGSDRR120
YRDILRGTCA  VTPMVRFPSW  AAARSRPAGL  PPSALRIGCL  LLARSGEAAV  LGAARDALAA180
QTHQPEWVSV  AWSGAPPPSE  DGPVSHRAWD  DAAGFDDLLR  DADALCLLRP  GDVLEPEALA240
LLAHTLSDAD  IAYGDAIGPD  GRPQLKPDWS  PDRALATGYP  GFPLLLSKTW  LSASPGRPVG300
PMEEIGLAIA  AAATTRAARV  AHVPRILART  VGDGLDASAR  AAALDARRSG  WPSLRAEIHD360
GAVHLKWPLP  DPAPLVSIVI  PSRDRLDLIT  RVCRGVLHET  AYAAIELIIV  DNGSTDPAVL420
DHYASLRDDP  RVRILMDPQP  FNFAAMVNAG  VGAASGAIVV  LLNNDVAVLE  PGWLEAMVRQ480
ACRPDVGAVG  AKLLYGDGTL  QHAGVVVGLG  GRAGHILRRR  PGDTPGHLGR  LRVAHEVSAV540
TAACLAVARD  KYLAVGGFDA  ESFPVDFNDV  DFCLRLGAAG  WKTVWTPAAT  LAHLESVSRG600
PSVGAKRTRF  EQEAARFSER  WRAVIRHDPF  YHPALSVTTF  GEDLE645

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help