CAZyme3D

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Entry ID

Information for CAZyme ID: AIL83852.1

Basic Information

GenBank IDAIL83852.1
FamilyGH5_5
Sequence Length232
UniProt IDA4ULM3(100,100)Download
Average pLDDT?89.07
CAZy50 ID53850
CAZy50 RepNo, AGU11481.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID305
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia solanacearum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

GDTALSTAAA  TDTTTLKTAA  TTSISPLWLT  VAKDSAAFTV  SGTRTVRYGA  GSAWVAKSMS60
GTGQCTAAFF  GKDPAAGVAK  VCQVAQGTGT  LLWRGVSLAG  AEFGEGSLPG  TYGSNYIYPS120
ADSATYYKNK  GMNLVRLPFR  WERLQPTLNQ  ALDANELSRL  TGFVNAVTAA  GQTVLLDPHN180
YARYYGNVIG  SSAVPNSAYA  DFWRRVATQF  KGNARVIFGL  MNEPNSMPTE  QW232

Predicted 3D structure by AlphaFold2 with pLDDT = 89.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(93-232)

GDTALSTAAA  TDTTTLKTAA  TTSISPLWLT  VAKDSAAFTV  SGTRTVRYGA  GSAWVAKSMS60
GTGQCTAAFF  GKDPAAGVAK  VCQVAQGTGT  LLWRGVSLAG  AEFGEGSLPG  TYGSNYIYPS120
ADSATYYKNK  GMNLVRLPFR  WERLQPTLNQ  ALDANELSRL  TGFVNAVTAA  GQTVLLDPHN180
YARYYGNVIG  SSAVPNSAYA  DFWRRVATQF  KGNARVIFGL  MNEPNSMPTE  QW232

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help