CAZyme3D

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Entry ID

Information for CAZyme ID: AII53594.1

Basic Information

GenBank IDAII53594.1
FamilyGH13
Sequence Length627
UniProt IDA0A076I0N2(100,100)Download
Average pLDDT?95.29
CAZy50 ID47015
CAZy50 RepNo, QDA62539.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1356852
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. APR13

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKMLYTLLL  AASLLPLGAA  AQSITRLNPT  NWWVGMKHNT  VQVLVYGPQA  GTLTYTVNYP60
GVKLVKTNTV  ENPNYAFLDL  VIAPTAKPGQ  VALVGKKGTK  TATQNWELKA  RDNAVKAQGV120
TQADFIYLAM  PDRFANGDPS  NDKFADMADP  SSDRAQPFLR  HGGDLQGAAQ  HLDYLKELGV180
TAVWFTPVIE  NNQGLTDEGG  AKRSAYHGYG  FTDHYTVDKR  LGGNAAYKAF  VQKAHGMGLK240
VVQDAVYNHI  GNNHWFIQDL  PMKSWLHQWP  TYTNTSYRQQ  PITDPHAAQI  DKRVTLDGWF300
VPFLPDLNQQ  NPYVANFLIQ  HALWTVENFG  VDAWRIDTYM  YNDQPFMNRC  NAALLQEYPK360
IHIFGESSVT  SIVDQAYYVR  NKIDFPFKSN  QPGGLDFVLE  NAMLAGLKEV  GTPGATGWDN420
GAQRVYQALA  QDAVYQDPTK  LVTFIDNHDH  NRFLSEVGED  VAKYKMGLTW  LLTTRGIPSI480
YYGTEILMKN  FKDPSDAEVR  RDFPGGFPGD  QQNKFTAAGR  TEAENDAFRF  VSTLANYRRT540
HPVLSSGQLM  QYLPENGQYV  YFRYADAGTV  MVASNTTDKA  ASLPTARFSE  RMTGFTKARN600
VLTGETISDL  KTLQLPAKTA  LVLELMK627

Predicted 3D structure by AlphaFold2 with pLDDT = 95.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13(163-496)

MKKMLYTLLL  AASLLPLGAA  AQSITRLNPT  NWWVGMKHNT  VQVLVYGPQA  GTLTYTVNYP60
GVKLVKTNTV  ENPNYAFLDL  VIAPTAKPGQ  VALVGKKGTK  TATQNWELKA  RDNAVKAQGV120
TQADFIYLAM  PDRFANGDPS  NDKFADMADP  SSDRAQPFLR  HGGDLQGAAQ  HLDYLKELGV180
TAVWFTPVIE  NNQGLTDEGG  AKRSAYHGYG  FTDHYTVDKR  LGGNAAYKAF  VQKAHGMGLK240
VVQDAVYNHI  GNNHWFIQDL  PMKSWLHQWP  TYTNTSYRQQ  PITDPHAAQI  DKRVTLDGWF300
VPFLPDLNQQ  NPYVANFLIQ  HALWTVENFG  VDAWRIDTYM  YNDQPFMNRC  NAALLQEYPK360
IHIFGESSVT  SIVDQAYYVR  NKIDFPFKSN  QPGGLDFVLE  NAMLAGLKEV  GTPGATGWDN420
GAQRVYQALA  QDAVYQDPTK  LVTFIDNHDH  NRFLSEVGED  VAKYKMGLTW  LLTTRGIPSI480
YYGTEILMKN  FKDPSDAEVR  RDFPGGFPGD  QQNKFTAAGR  TEAENDAFRF  VSTLANYRRT540
HPVLSSGQLM  QYLPENGQYV  YFRYADAGTV  MVASNTTDKA  ASLPTARFSE  RMTGFTKARN600
VLTGETISDL  KTLQLPAKTA  LVLELMK627

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help