CAZyme3D

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Entry ID

Information for CAZyme ID: AII53124.1

Basic Information

GenBank IDAII53124.1
FamilyGT51
Sequence Length716
UniProt IDA0A076HZI6(100,100)Download
Average pLDDT?83.05
CAZy50 ID34368
CAZy50 RepNo, UOG73680.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1356852
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. APR13

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTPATKKKIA  IGLGIVVALL  ALGLTVFLLK  RQQLLDYAIR  QATAKVERKY  PVTLALGPAR60
FTDLNTVQIA  GMSLVPEAAP  TDTLLQARLL  TVSLSVRSLF  AGRPVFSNLE  ISDARFTARK120
TRSGQDNYSF  LYRKKGAQPE  VPRDTTQGVN  YGLLANQLLE  AGFDNMPGEA  DFQNFLVTYD180
SPRHRARVVM  PRLSIEDGDI  QGQLTAVIDS  VENRVGVQGH  IEPGDYALQA  EVFGLERRPV240
TLPYVQRRYG  ARVQFDTLRF  SLTEKELDDD  QLTVRGTASA  ANFIVNHPKL  SDRDVRFPRG300
GIDFVATLGQ  AYAALEKGTK  VTLNRMEFYP  TLSVRKLPLN  QRVVGKMING  VRNRREMLAG360
LQVQADIESA  ETAANTFFAA  LPEGMFNTLE  GMQGSGTLQY  RMHLDLDMNQ  VDSLEFSSSL420
TPKDFRITRM  GREDLNQLNQ  AFRYTAYNDK  GDSIKTFKVG  PVNPDFVPYD  AVSDYLKAAI480
MTAEDPRFLS  HKGFMEKAFV  KSAIQNIKEK  RFARGGSTIS  MQLVKNVFLT  RQKTVTRKIE540
EALIVWLIEN  TRLVSKERMF  EVYLNIIEWG  PKIYGVKEAA  EFYYAKEPSE  LNLSESLYMA600
SIIPRPRRYQ  MSFNQYGEMR  SAARYFHRLI  ADLMLQKGLI  SDGARNTLSY  SLSFPGRAHG660
SIFRAVRDTV  RATQPSDSTQ  FEPLNLIDLL  GGNAAPDEGV  NTTVPAPAEG  TPVPKP716

Predicted 3D structure by AlphaFold2 with pLDDT = 83.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(454-615)

MTPATKKKIA  IGLGIVVALL  ALGLTVFLLK  RQQLLDYAIR  QATAKVERKY  PVTLALGPAR60
FTDLNTVQIA  GMSLVPEAAP  TDTLLQARLL  TVSLSVRSLF  AGRPVFSNLE  ISDARFTARK120
TRSGQDNYSF  LYRKKGAQPE  VPRDTTQGVN  YGLLANQLLE  AGFDNMPGEA  DFQNFLVTYD180
SPRHRARVVM  PRLSIEDGDI  QGQLTAVIDS  VENRVGVQGH  IEPGDYALQA  EVFGLERRPV240
TLPYVQRRYG  ARVQFDTLRF  SLTEKELDDD  QLTVRGTASA  ANFIVNHPKL  SDRDVRFPRG300
GIDFVATLGQ  AYAALEKGTK  VTLNRMEFYP  TLSVRKLPLN  QRVVGKMING  VRNRREMLAG360
LQVQADIESA  ETAANTFFAA  LPEGMFNTLE  GMQGSGTLQY  RMHLDLDMNQ  VDSLEFSSSL420
TPKDFRITRM  GREDLNQLNQ  AFRYTAYNDK  GDSIKTFKVG  PVNPDFVPYD  AVSDYLKAAI480
MTAEDPRFLS  HKGFMEKAFV  KSAIQNIKEK  RFARGGSTIS  MQLVKNVFLT  RQKTVTRKIE540
EALIVWLIEN  TRLVSKERMF  EVYLNIIEWG  PKIYGVKEAA  EFYYAKEPSE  LNLSESLYMA600
SIIPRPRRYQ  MSFNQYGEMR  SAARYFHRLI  ADLMLQKGLI  SDGARNTLSY  SLSFPGRAHG660
SIFRAVRDTV  RATQPSDSTQ  FEPLNLIDLL  GGNAAPDEGV  NTTVPAPAEG  TPVPKP716

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help