CAZyme3D

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Entry ID

Information for CAZyme ID: AIF48404.1

Basic Information

GenBank IDAIF48404.1
FamilyCE4
Sequence Length210
UniProt IDA0A075K2E4(100,100)Download
Average pLDDT?94.97
CAZy50 ID178137
CAZy50 RepNo, AND70995.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1217721
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella japonica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLRPKKMQL  LRCLPRGVVS  TSASRAEKAL  YLTFDDGPHP  DHTPALLELL  REYGVKATFF60
LIGREAERYP  QLVERIVEEG  HRLGNHSYSH  PMFDALTHTE  QWVEVERTDE  VLSSFDGRRY120
HVFRPPRGVF  SLLLTLRFAF  TRRQLTYWSY  DTLDYQEREP  HELVARLRNQ  PPRAGDVMLM180
HDDSDCSRRM  LELLLPEWKQ  HGFTFRALPA  210

Predicted 3D structure by AlphaFold2 with pLDDT = 94.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(24-130)

MTLRPKKMQL  LRCLPRGVVS  TSASRAEKAL  YLTFDDGPHP  DHTPALLELL  REYGVKATFF60
LIGREAERYP  QLVERIVEEG  HRLGNHSYSH  PMFDALTHTE  QWVEVERTDE  VLSSFDGRRY120
HVFRPPRGVF  SLLLTLRFAF  TRRQLTYWSY  DTLDYQEREP  HELVARLRNQ  PPRAGDVMLM180
HDDSDCSRRM  LELLLPEWKQ  HGFTFRALPA  210

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help