CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AIA30579.1

Basic Information

GenBank IDAIA30579.1
FamilyCBM50, GH23
Sequence Length473
UniProt IDA0A059XPS5(100,100)Download
Average pLDDT?74.20
CAZy50 ID74816
CAZy50 RepNo, AFS53619.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1441628
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusLeptospirillum
SpeciesLeptospirillum ferriphilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIRKRTGKI  LALVSPVFLL  AAGCSTTHTG  SADTSGPVAM  TVTPPAIPSP  PPNQIAKPPV60
TIAKSAAGTA  LPPSSTLSVA  PKPLEKPFFM  RVPDDPSIEW  YDTYFQTVAR  NHFALWLSRS120
TEYLPMMKSV  FREEGLPEDL  VYLSLIESGF  SPRAYSYSRA  AGLWQFMRGT  GRKYGLRINA180
WIDQRRDPVL  STRAAAKYLK  DLYTEFHSWS  LALAAYNAGE  GKVANAVADT  GTKDYWEIRN240
SNTLSNETKD  YVPKFLAAVR  IAKDPSRYGF  NNIDYRSPLE  TETATLQHPA  EIRVLAKAAG300
VSIRKFREMN  PEFTRWATPP  HMAPISLNIP  MGKKEDFLAN  ISRLPHMSRR  DLYADVDGGV360
HTIRPGESLW  TIARRYHVSM  QALMNANGLS  SSSVIHTGKR  INIPVSSYAS  NRYRHVRGHG420
GSGHWMRHRI  RRGESLFALA  KRFRTTISAI  RSKNHLFGRT  YLREGQMIMV  PAR473

Predicted 3D structure by AlphaFold2 with pLDDT = 74.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(123-262)+CBM50(361-404)+CBM50(428-471)

MSIRKRTGKI  LALVSPVFLL  AAGCSTTHTG  SADTSGPVAM  TVTPPAIPSP  PPNQIAKPPV60
TIAKSAAGTA  LPPSSTLSVA  PKPLEKPFFM  RVPDDPSIEW  YDTYFQTVAR  NHFALWLSRS120
TEYLPMMKSV  FREEGLPEDL  VYLSLIESGF  SPRAYSYSRA  AGLWQFMRGT  GRKYGLRINA180
WIDQRRDPVL  STRAAAKYLK  DLYTEFHSWS  LALAAYNAGE  GKVANAVADT  GTKDYWEIRN240
SNTLSNETKD  YVPKFLAAVR  IAKDPSRYGF  NNIDYRSPLE  TETATLQHPA  EIRVLAKAAG300
VSIRKFREMN  PEFTRWATPP  HMAPISLNIP  MGKKEDFLAN  ISRLPHMSRR  DLYADVDGGV360
HTIRPGESLW  TIARRYHVSM  QALMNANGLS  SSSVIHTGKR  INIPVSSYAS  NRYRHVRGHG420
GSGHWMRHRI  RRGESLFALA  KRFRTTISAI  RSKNHLFGRT  YLREGQMIMV  PAR473

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help