CAZyme3D

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Entry ID

Information for CAZyme ID: AIA30284.1

Basic Information

GenBank IDAIA30284.1
FamilyGT2
Sequence Length714
UniProt IDA0A059XP28(100,100)Download
Average pLDDT?89.98
CAZy50 ID4139
CAZy50 RepNo, QQD71426.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1441628
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusLeptospirillum
SpeciesLeptospirillum ferriphilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRPWTAKTI  RSVVLIPITF  LIFFLATIPV  PNWQTQLWLG  TFLFLAALLL  KIFLDGKRWV60
ILTLITLSFF  STLRYAWWRT  TETLGTGDPK  VHWYEYPFIF  LLFGAELYSW  IILVLGYLQT120
AYPRGRKADP  LPPDPESWPT  VDILIPTYNE  PLAVVRTTVL  AALNMDWPPE  KKKVFLLDDG180
NREEFATFAA  QTGVVYVARP  EHRHAKAGNV  NYALARSDGK  YVALFDCDHV  PTRSFLQTTV240
GILEKSSRVA  FVQTPHHFYS  PDPYERNLNV  FKKLPNEGEL  FYGVIQDGND  LWNASTFCGS300
CTVLRRKALN  EIQGFAVDTV  TEDAHTSIRL  HRLGWESAYL  NLPQAAGLAT  PSLSAHIRQR360
IRWARGMIQI  FRIENPLLAR  GLTLAQKLCY  LNGMLFFLSS  LPRIIFLTAP  LAYLYFGVRI420
FDADAYSIAS  YAFPTIALSL  LANAAINGRH  RHSFWNQVYE  TTLAPYIFLP  TLLAMVRPDL480
GTFNVTAKEG  RIEKEFYDRR  IARPFIILWV  LNLGGLISGI  LRYTGGFGEI  PTIVLTLAWT540
VHNLLIIGTT  LAVGWERTQR  RFRPRINVTY  PVRLTAPDGQ  YVYGETEDMS  DDGVRIRLLK600
SASLRTGEDV  RVEIPFLDRI  HEFPAEIVGM  DEFSIRLNFH  PLTLEEEKNR  VLLLYGRADA660
WVKLGLSEKE  DSVLKSLWEV  ALFAIIGQGR  ALKGIFWSSG  PKISRTPQTL  GKVP714

Predicted 3D structure by AlphaFold2 with pLDDT = 89.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(142-312)

MNRPWTAKTI  RSVVLIPITF  LIFFLATIPV  PNWQTQLWLG  TFLFLAALLL  KIFLDGKRWV60
ILTLITLSFF  STLRYAWWRT  TETLGTGDPK  VHWYEYPFIF  LLFGAELYSW  IILVLGYLQT120
AYPRGRKADP  LPPDPESWPT  VDILIPTYNE  PLAVVRTTVL  AALNMDWPPE  KKKVFLLDDG180
NREEFATFAA  QTGVVYVARP  EHRHAKAGNV  NYALARSDGK  YVALFDCDHV  PTRSFLQTTV240
GILEKSSRVA  FVQTPHHFYS  PDPYERNLNV  FKKLPNEGEL  FYGVIQDGND  LWNASTFCGS300
CTVLRRKALN  EIQGFAVDTV  TEDAHTSIRL  HRLGWESAYL  NLPQAAGLAT  PSLSAHIRQR360
IRWARGMIQI  FRIENPLLAR  GLTLAQKLCY  LNGMLFFLSS  LPRIIFLTAP  LAYLYFGVRI420
FDADAYSIAS  YAFPTIALSL  LANAAINGRH  RHSFWNQVYE  TTLAPYIFLP  TLLAMVRPDL480
GTFNVTAKEG  RIEKEFYDRR  IARPFIILWV  LNLGGLISGI  LRYTGGFGEI  PTIVLTLAWT540
VHNLLIIGTT  LAVGWERTQR  RFRPRINVTY  PVRLTAPDGQ  YVYGETEDMS  DDGVRIRLLK600
SASLRTGEDV  RVEIPFLDRI  HEFPAEIVGM  DEFSIRLNFH  PLTLEEEKNR  VLLLYGRADA660
WVKLGLSEKE  DSVLKSLWEV  ALFAIIGQGR  ALKGIFWSSG  PKISRTPQTL  GKVP714

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help