CAZyme3D

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Entry ID

Information for CAZyme ID: AHM58501.1

Basic Information

GenBank IDAHM58501.1
FamilyCE8
Sequence Length366
UniProt IDA0A0D3L8V0(100,100)Download
Average pLDDT?86.75
CAZy50 ID40703
CAZy50 RepNo, QIH37756.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1257021
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
Genus
SpeciesFlammeovirgaceae bacterium 311

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRNNPTNSNF  INYTKAHHRH  LRIILAVFAV  LLLTLTACAQ  NKFISEPADA  TQKASAAVVP60
AAPKTKIVVA  KDGSGDYKYI  QDAIDAVRAF  TPIRITIYIR  NGIYKEKVHI  PAWVTDINLV120
GESTENTIIT  YDDHAGRGKM  GTFETYTFRI  EGNNINVENL  TIQNTSGPVG  QAVALHVEGD180
RLVFRNCRFL  GDQDTIFASG  EGSRQYYVDC  YIEGTTDFIF  GPATALFENC  HIHSKKDSYI240
TAASTPEWIR  YGYVFKGCTL  TADAAVEEVY  LGRPWRDFAK  TVFLNCVLGD  HIRPEGWHNW300
SRPEAEKTTY  YAEFKNSGPG  ANARERVAWS  EQLTEKEAAS  YTIENILAGD  NSTAITETRW360
YNRKVQ366

Predicted 3D structure by AlphaFold2 with pLDDT = 86.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE8(67-348)

MRNNPTNSNF  INYTKAHHRH  LRIILAVFAV  LLLTLTACAQ  NKFISEPADA  TQKASAAVVP60
AAPKTKIVVA  KDGSGDYKYI  QDAIDAVRAF  TPIRITIYIR  NGIYKEKVHI  PAWVTDINLV120
GESTENTIIT  YDDHAGRGKM  GTFETYTFRI  EGNNINVENL  TIQNTSGPVG  QAVALHVEGD180
RLVFRNCRFL  GDQDTIFASG  EGSRQYYVDC  YIEGTTDFIF  GPATALFENC  HIHSKKDSYI240
TAASTPEWIR  YGYVFKGCTL  TADAAVEEVY  LGRPWRDFAK  TVFLNCVLGD  HIRPEGWHNW300
SRPEAEKTTY  YAEFKNSGPG  ANARERVAWS  EQLTEKEAAS  YTIENILAGD  NSTAITETRW360
YNRKVQ366

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help