CAZyme3D

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Entry ID

Information for CAZyme ID: AHJ18879.1

Basic Information

GenBank IDAHJ18879.1
FamilyCE2
Sequence Length361
UniProt IDW6EXC9(100,100)Download
Average pLDDT?97.50
CAZy50 ID84311
CAZy50 RepNo, BAQ30229.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1385940
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium breve

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQQITPNNPV  IRTMGRIDID  VPDRPVWVFP  YTQATFRCTG  TSVGVRLINR  HNYGDSTLGA60
VIDGVPYRAR  ITENDAETTV  MLAEHLPDIE  HEVVVYKRQD  GEHYLEITGF  LIDDQARVLP120
PATPAPIRRI  EVYGDSVSCG  ERNEAALYTG  KADPDTDLSP  YSNSWYSYAA  ITARNLGASA180
NIVAQGGASL  LDGIGWFCGP  DYVGMESIWD  RIEYNPFLGE  TKPWDFSRYT  PQVVVVALGQ240
NDAHPVDFMA  ADYQGEQSVQ  WRARYVDFLR  TLRGKYLQAT  IICATTVLQH  DASWDQTIDD300
AVRVVSTGDR  NNGIAPDPKV  HHFLYSRNGS  ATPGHPRITE  HQEMADELTT  FIESLGPAIW360
D361

Predicted 3D structure by AlphaFold2 with pLDDT = 97.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(129-352)

MQQITPNNPV  IRTMGRIDID  VPDRPVWVFP  YTQATFRCTG  TSVGVRLINR  HNYGDSTLGA60
VIDGVPYRAR  ITENDAETTV  MLAEHLPDIE  HEVVVYKRQD  GEHYLEITGF  LIDDQARVLP120
PATPAPIRRI  EVYGDSVSCG  ERNEAALYTG  KADPDTDLSP  YSNSWYSYAA  ITARNLGASA180
NIVAQGGASL  LDGIGWFCGP  DYVGMESIWD  RIEYNPFLGE  TKPWDFSRYT  PQVVVVALGQ240
NDAHPVDFMA  ADYQGEQSVQ  WRARYVDFLR  TLRGKYLQAT  IICATTVLQH  DASWDQTIDD300
AVRVVSTGDR  NNGIAPDPKV  HHFLYSRNGS  ATPGHPRITE  HQEMADELTT  FIESLGPAIW360
D361

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help