CAZyme3D

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Entry ID

Information for CAZyme ID: AHG72752.1

Basic Information

GenBank IDAHG72752.1
FamilyGT52
Sequence Length303
UniProt IDW0Q3C7(100,100)Download
Average pLDDT?90.94
CAZy50 ID148253
CAZy50 RepNo, QIM65589.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1432056
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia sp. USDA-ARS-USMARC-1261

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQVLIAEKII  EMHPNDEFFG  VMLSTVKNAK  FDFYQARLGK  KCQQFFAMQQ  HSERIQLLKE60
ILYLKSTFGG  KQFNKVFLAN  INELEIQFLL  SAIKFNELNT  FDDGAANVVP  SSIFYKEENI120
GLNRKLINMF  LGNKYSLEKL  KNLSKTHYTI  YQGFPNIIKN  TVYVDLINKN  ELSGSELETS180
KVFNILLGQP  IFEREDEKNI  ALAEKVIKAF  DVDLYLPHPR  EKYKLSNVEY  IDTNLILEDY240
IFQEFSHKKC  RVYTYFSSAV  INILNKSPNI  EVVALRVEVD  NPAYIETYEL  FEKLGIKIID300
IRE303

Predicted 3D structure by AlphaFold2 with pLDDT = 90.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(17-276)

MQVLIAEKII  EMHPNDEFFG  VMLSTVKNAK  FDFYQARLGK  KCQQFFAMQQ  HSERIQLLKE60
ILYLKSTFGG  KQFNKVFLAN  INELEIQFLL  SAIKFNELNT  FDDGAANVVP  SSIFYKEENI120
GLNRKLINMF  LGNKYSLEKL  KNLSKTHYTI  YQGFPNIIKN  TVYVDLINKN  ELSGSELETS180
KVFNILLGQP  IFEREDEKNI  ALAEKVIKAF  DVDLYLPHPR  EKYKLSNVEY  IDTNLILEDY240
IFQEFSHKKC  RVYTYFSSAV  INILNKSPNI  EVVALRVEVD  NPAYIETYEL  FEKLGIKIID300
IRE303

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help