CAZyme3D

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Entry ID

Information for CAZyme ID: AHF11930.1

Basic Information

GenBank IDAHF11930.1
FamilyGH85
Sequence Length1253
UniProt IDW0EM55(100,100)Download
Average pLDDT?88.78
CAZy50 ID6864
CAZy50 RepNo, UBD16913.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID880074
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusBarnesiella
SpeciesBarnesiella viscericola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRNLFLFSG  ILALSLSAQA  QELKDGYMKW  PDSQKLGEYV  SQWTPGTPLF  EDENFYISRV60
KPKARFRNAS  TQINENLTEE  TDKKLVFWVP  VGTASDGNTN  ARPNGKFDSE  VFSMWSYVTH120
YGNWTSPQGW  VPGGFADVAH  KNGVGVSGVA  SIPWGGLGKD  WENSLNNMSK  TADIRTKVAE180
FLHYHGVDGL  GYNSEFSTSN  TTMVANVRSL  NEEVHKYLTE  KGNPVAENFW  YDGTNDNGQC240
TFDQGLGDHN  NETFGDGEHI  RTSLFLNYNW  WRSALGTFNT  STVASKAPGR  DLLDLYAGFN300
MQGGDPSTWT  TLKDYNISIG  LWGAHDFNML  WADRANYGST  DMSKQLGYQN  VIEQFFSNGK360
RNPIDKIEVF  NRGNHHPNEG  WFGMSAFMTA  RSSLSWDLTT  EPFITYFNLG  NGQFFNWMGE420
RQNNNEWYNI  GVQDYLPTWR  FWFASEFLGK  TKDKVVANGL  DAKFTFDDAY  VGGSCLRIFG480
SASNEYLHLF  KTRFALASGD  KITIRYKLIR  GQADINLALS  AEGAENTVLN  ESRFSVLTTA540
NSVVDDEMWV  EKTFTVLGPL  ASMANQNIAM  VALHFANAEN  LELYLGEFSI  TRNEMTTPAA600
PRITVAKVLA  SHYKGVDAKV  IFEMDNTKPA  GEPVYNLDVN  ASMFKLYAQQ  ENEEPIFMGI660
TTSWAGMYYS  IPTNLQGSDR  IRLGVAAVSV  DMKSDSEITW  SEYMDMGEYT  TTDEIQINKT720
TIKPNESFEI  SYVDPRHAPA  DWKLLNSDGE  TVKQAANTTV  FSVEEGIEEI  GGYDLQVTCN780
GQTATYGYYV  QITSEAVGAL  PEIYTLTVDG  NTTENAEVAI  DANQSLTLGY  TGRKANGASS840
RGIEINDSWI  GGKLNDAGIV  ARKSFSVSAW  VRFTTLPESS  AFFSIENRAG  GWPVNNWGWM900
WSNISSEGKI  SVYTIRGDGA  ASPVALNYTF  PNTTVSPNAW  NHVVLTFEYN  EQGQFRSLFY960
LNGILQKSTW  TYGSSASGTT  EEWVPKADYN  VSASDWFCFA  GGRGEQPVTN  NGIVDDLLIW1020
DGGMTQDEVN  QVKAGLDASN  LPSKVIAYWD  FETDANEQNY  FLSKGSKADV  EACSFKLVAS1080
TAQGSGIQTP  QRPLYISGCP  FIAGTAFQVE  TLPTWTAKRG  ELTESTGTDV  EGSTKLSYST1140
AGDYTVTLTL  ENTLGSDTKT  YPVFKVSGGD  GVADEVMGDM  RTYTVDGVLF  VEFAEEGTYQ1200
VDVYNVSGML  VAEKEAAVAA  GQNMSITLGA  KDVYVVKVMK  EGKVVRAIKV  LNR1253

Predicted 3D structure by AlphaFold2 with pLDDT = 88.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH85(101-415)

MKRNLFLFSG  ILALSLSAQA  QELKDGYMKW  PDSQKLGEYV  SQWTPGTPLF  EDENFYISRV60
KPKARFRNAS  TQINENLTEE  TDKKLVFWVP  VGTASDGNTN  ARPNGKFDSE  VFSMWSYVTH120
YGNWTSPQGW  VPGGFADVAH  KNGVGVSGVA  SIPWGGLGKD  WENSLNNMSK  TADIRTKVAE180
FLHYHGVDGL  GYNSEFSTSN  TTMVANVRSL  NEEVHKYLTE  KGNPVAENFW  YDGTNDNGQC240
TFDQGLGDHN  NETFGDGEHI  RTSLFLNYNW  WRSALGTFNT  STVASKAPGR  DLLDLYAGFN300
MQGGDPSTWT  TLKDYNISIG  LWGAHDFNML  WADRANYGST  DMSKQLGYQN  VIEQFFSNGK360
RNPIDKIEVF  NRGNHHPNEG  WFGMSAFMTA  RSSLSWDLTT  EPFITYFNLG  NGQFFNWMGE420
RQNNNEWYNI  GVQDYLPTWR  FWFASEFLGK  TKDKVVANGL  DAKFTFDDAY  VGGSCLRIFG480
SASNEYLHLF  KTRFALASGD  KITIRYKLIR  GQADINLALS  AEGAENTVLN  ESRFSVLTTA540
NSVVDDEMWV  EKTFTVLGPL  ASMANQNIAM  VALHFANAEN  LELYLGEFSI  TRNEMTTPAA600
PRITVAKVLA  SHYKGVDAKV  IFEMDNTKPA  GEPVYNLDVN  ASMFKLYAQQ  ENEEPIFMGI660
TTSWAGMYYS  IPTNLQGSDR  IRLGVAAVSV  DMKSDSEITW  SEYMDMGEYT  TTDEIQINKT720
TIKPNESFEI  SYVDPRHAPA  DWKLLNSDGE  TVKQAANTTV  FSVEEGIEEI  GGYDLQVTCN780
GQTATYGYYV  QITSEAVGAL  PEIYTLTVDG  NTTENAEVAI  DANQSLTLGY  TGRKANGASS840
RGIEINDSWI  GGKLNDAGIV  ARKSFSVSAW  VRFTTLPESS  AFFSIENRAG  GWPVNNWGWM900
WSNISSEGKI  SVYTIRGDGA  ASPVALNYTF  PNTTVSPNAW  NHVVLTFEYN  EQGQFRSLFY960
LNGILQKSTW  TYGSSASGTT  EEWVPKADYN  VSASDWFCFA  GGRGEQPVTN  NGIVDDLLIW1020
DGGMTQDEVN  QVKAGLDASN  LPSKVIAYWD  FETDANEQNY  FLSKGSKADV  EACSFKLVAS1080
TAQGSGIQTP  QRPLYISGCP  FIAGTAFQVE  TLPTWTAKRG  ELTESTGTDV  EGSTKLSYST1140
AGDYTVTLTL  ENTLGSDTKT  YPVFKVSGGD  GVADEVMGDM  RTYTVDGVLF  VEFAEEGTYQ1200
VDVYNVSGML  VAEKEAAVAA  GQNMSITLGA  KDVYVVKVMK  EGKVVRAIKV  LNR1253

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help