CAZyme3D

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Entry ID

Information for CAZyme ID: AHD10689.1

Basic Information

GenBank IDAHD10689.1
FamilyCE4
Sequence Length471
UniProt IDV9WLG6(100,100)Download
Average pLDDT?93.66
CAZy50 ID70697
CAZy50 RepNo, UJX46959.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1423144
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter gallaeciensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRYPRNMIG  YGATPPDAAW  PGKAKVAVQF  VLNFEEGGEN  SILHGDAGSE  AFLSDIAGAA60
SWPGQRHWNM  ESIYDYGARA  GFWRLHRMFT  AADIPVTIYG  VASALARAPE  QVAAMKAADW120
EIASHGLKWV  EHKDMAEEEE  RAAIAEAIRL  HTEVVGTRPR  GWYTGRCSEN  TVRLVAEEGG180
FDYVSDTYDD  DLPYWLEVGA  RDQLIIPYTL  EANDMRFATA  PGYITGEQFY  QYLKDAFDLL240
YTEGEAGAPK  MMSVGLHCRL  IGRPGKAAGL  KRFIDYIQGF  DGVWCPRRID  IADHWAKTHP300
HQRRELPSQM  TRARFVEAYG  GIFEHSPWIA  DRAHDLELGP  AHDRAAGLHN  ALCRMFRSAS360
EEERLGVLTA  HPDLAGKLAA  AKRLTAESTN  EQASVGLDAL  TDAERTRFTQ  LNTAYVEKHG420
FPFIIAVRDH  DKASILAAFE  RRIDHDRASE  FAEACRQVER  IAEFRLKDLL  P471

Predicted 3D structure by AlphaFold2 with pLDDT = 93.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(75-186)

MNRYPRNMIG  YGATPPDAAW  PGKAKVAVQF  VLNFEEGGEN  SILHGDAGSE  AFLSDIAGAA60
SWPGQRHWNM  ESIYDYGARA  GFWRLHRMFT  AADIPVTIYG  VASALARAPE  QVAAMKAADW120
EIASHGLKWV  EHKDMAEEEE  RAAIAEAIRL  HTEVVGTRPR  GWYTGRCSEN  TVRLVAEEGG180
FDYVSDTYDD  DLPYWLEVGA  RDQLIIPYTL  EANDMRFATA  PGYITGEQFY  QYLKDAFDLL240
YTEGEAGAPK  MMSVGLHCRL  IGRPGKAAGL  KRFIDYIQGF  DGVWCPRRID  IADHWAKTHP300
HQRRELPSQM  TRARFVEAYG  GIFEHSPWIA  DRAHDLELGP  AHDRAAGLHN  ALCRMFRSAS360
EEERLGVLTA  HPDLAGKLAA  AKRLTAESTN  EQASVGLDAL  TDAERTRFTQ  LNTAYVEKHG420
FPFIIAVRDH  DKASILAAFE  RRIDHDRASE  FAEACRQVER  IAEFRLKDLL  P471

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help