CAZyme3D

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Entry ID

Information for CAZyme ID: AHC74015.1

Basic Information

GenBank IDAHC74015.1
FamilyGH102
Sequence Length404
UniProt IDV9TXG2(100,100)Download
Average pLDDT?90.05
CAZy50 ID92816
CAZy50 RepNo, AFX99704.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1401328
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyRhodospirillaceae
GenusCandidatus Endolissoclinum
SpeciesCandidatus Endolissoclinum faulkneri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFLKKNKQIL  VLIAVSLLLN  ILITCSVNNF  STAEEGKTLL  LSRYNFANLS  GWLEDNVDAA60
MPAVLSSCSR  MLENDDDKYI  SAALPRFGTV  GDWRKACTAL  EDRFRANSTA  ATARAVFEEY120
FAVWRASDEI  ASDGIFTGYY  EPQVRGARRY  DATKYTVPLY  PCPDDLITLN  LGDFRKNMKG180
GRIAGRVGGL  QMKLYDSRAD  IEGGSLKDKV  KPIFYLADPI  EAFFLHIQGS  GLIILPDGSS240
TRVAYDGQNG  HLYFPIGRYL  IKKGYLKHDD  ISMQTIHTWL  KNHPKQMYSV  MNLNPSYIFF300
HEISGEGPIG  AQGVVLTAGR  SLAVDRTKHA  LGVPIWVDID  YDYYPKGIKR  LTVAQDTGGA360
IRGPIRGDFF  WGSGKSAGEM  AGSMKARGRM  WLLLPLSVNP  NYMH404

Predicted 3D structure by AlphaFold2 with pLDDT = 90.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(147-300)

MFLKKNKQIL  VLIAVSLLLN  ILITCSVNNF  STAEEGKTLL  LSRYNFANLS  GWLEDNVDAA60
MPAVLSSCSR  MLENDDDKYI  SAALPRFGTV  GDWRKACTAL  EDRFRANSTA  ATARAVFEEY120
FAVWRASDEI  ASDGIFTGYY  EPQVRGARRY  DATKYTVPLY  PCPDDLITLN  LGDFRKNMKG180
GRIAGRVGGL  QMKLYDSRAD  IEGGSLKDKV  KPIFYLADPI  EAFFLHIQGS  GLIILPDGSS240
TRVAYDGQNG  HLYFPIGRYL  IKKGYLKHDD  ISMQTIHTWL  KNHPKQMYSV  MNLNPSYIFF300
HEISGEGPIG  AQGVVLTAGR  SLAVDRTKHA  LGVPIWVDID  YDYYPKGIKR  LTVAQDTGGA360
IRGPIRGDFF  WGSGKSAGEM  AGSMKARGRM  WLLLPLSVNP  NYMH404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help