CAZyme3D

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Entry ID

Information for CAZyme ID: AHB71437.1

Basic Information

GenBank IDAHB71437.1
FamilyCBM34, GH13_21
Sequence Length605
UniProt IDV5U2R0(100,100)Download
Average pLDDT?93.56
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID413503
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCronobacter
SpeciesCronobacter malonaticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLNAWHLPVA  PFIHRQGEKL  LITLWLAGDA  LPEKVMLRYE  RDNEETPFEM  KRLSAAPHPQ60
VSAWQASIPL  GDGQPRRRYG  FKLLWGDRQQ  WFSPLGLSEF  PPARLALFAI  DAPDDGPQWV120
QDQVFYQIFP  DRFARSTTRG  AQQDNIYFHH  AQGHDIILRD  WHEPVSAEAG  GSTFYGGDLD180
GICEKLPYLK  KLGVTALYLN  PIFSAPSVHK  YDTADYRHVD  PQFGGDEALL  RLREKTRETG240
MRLILDGVFN  HTGDTHPWFD  RQNHGTDGAC  HHPDSPTRNW  YTFAGDGHAF  CWLGYDSLPK300
LDFAEPGVVD  EIYAGEESVV  KHWLKAPWSI  DGWRLDVVHM  LGESGGAKAN  LRHVEGITRA360
AKAVNPQAFV  FGEHFGDARQ  WLQNDVEDAA  MNYRGFTTPV  WSFLAGVDHG  LEPQQLDAAD420
CARWMEEYRA  ALSHQQQLRM  FNQLDSHDTA  RFKTVAKGDP  ARIRAAAVWL  FCWPGVPCVF480
YGDEVGVEGG  NDPFCRQPFP  WDKTQQDGEL  LALYQRLARL  RHRNRALRSG  ACQVVYAKSD540
VLVFTRVFQQ  ERVLVALNRG  AACEITLPFS  PLLDDRAWTR  EEGGGALEGQ  TLRLAAGAAV600
ILHSR605

Predicted 3D structure by AlphaFold2 with pLDDT = 93.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(5-107)+GH13_21(177-490)

MLNAWHLPVA  PFIHRQGEKL  LITLWLAGDA  LPEKVMLRYE  RDNEETPFEM  KRLSAAPHPQ60
VSAWQASIPL  GDGQPRRRYG  FKLLWGDRQQ  WFSPLGLSEF  PPARLALFAI  DAPDDGPQWV120
QDQVFYQIFP  DRFARSTTRG  AQQDNIYFHH  AQGHDIILRD  WHEPVSAEAG  GSTFYGGDLD180
GICEKLPYLK  KLGVTALYLN  PIFSAPSVHK  YDTADYRHVD  PQFGGDEALL  RLREKTRETG240
MRLILDGVFN  HTGDTHPWFD  RQNHGTDGAC  HHPDSPTRNW  YTFAGDGHAF  CWLGYDSLPK300
LDFAEPGVVD  EIYAGEESVV  KHWLKAPWSI  DGWRLDVVHM  LGESGGAKAN  LRHVEGITRA360
AKAVNPQAFV  FGEHFGDARQ  WLQNDVEDAA  MNYRGFTTPV  WSFLAGVDHG  LEPQQLDAAD420
CARWMEEYRA  ALSHQQQLRM  FNQLDSHDTA  RFKTVAKGDP  ARIRAAAVWL  FCWPGVPCVF480
YGDEVGVEGG  NDPFCRQPFP  WDKTQQDGEL  LALYQRLARL  RHRNRALRSG  ACQVVYAKSD540
VLVFTRVFQQ  ERVLVALNRG  AACEITLPFS  PLLDDRAWTR  EEGGGALEGQ  TLRLAAGAAV600
ILHSR605

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help