CAZyme3D

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Entry ID

Information for CAZyme ID: AGY59900.1

Basic Information

GenBank IDAGY59900.1
FamilyCBM20, GH13_2
Sequence Length623
UniProt IDU5QQE2(100,100)Download
Average pLDDT?93.66
CAZy50 ID41712
CAZy50 RepNo, AFY79807.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1183438
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderGloeobacterales
FamilyGloeobacteraceae
GenusGloeobacter
SpeciesGloeobacter kilaueensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MISQSQIPPD  TDAAKAAAEQ  EEEFINLLQL  SDIEFRGETI  YFIVVDRFFN  GDPGNDEGPD60
PSLYDPERRD  WGKYWGGDLE  GIIAKLDYLQ  KLGVTAIWVT  PLFEQIEAMS  WEAAPIHGYW120
TRDFKRINAR  WVSGPEEVRL  FERNDTTFDR  LIKALHERGM  KLILDVVCNH  SSPDAAGIKG180
QLFDDGKLIA  DFNDDKDFWY  HHYGEVSDWN  DEWQVQNCEL  AGLATFNENN  IHYRNYIKGA240
IKLWLDKGVD  ALRVDTVKHM  PIWFWQEFNS  DIQAHKPDVF  VFGEWIYSHP  LSERSVEFAN300
FSGMSMLDFG  LCIAIRQALA  QADPSGFHLI  EDVFREDWRY  RGATELVTFI  DNHDMPRFQS360
LGADDETLRL  AVDLIMLSRG  IPCLYYGTEQ  YLHDDTDGGN  DPYNRPMMAL  WDERTPLFRD420
LHRLSAVRRR  NPAVKWGGQW  TRYINPDIYA  FVRKYRDARC  FVALNRSIET  VLVEDVLTEL480
PDGTHRCVLS  GEDYTIKAGR  LEKLELAPRQ  VVVLSVTGKP  VRGRQVARIQ  LNGIRTRPGE540
IVAIVGDCPE  LGNWDRDQAV  ALEYINENTW  LGEVAIKQSA  DKIISYKYVV  LREQGQPIYE600
NRTSRRRFAP  NGTIAKWRDI  WEE623

Predicted 3D structure by AlphaFold2 with pLDDT = 93.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_2(76-392)+CBM20(534-606)

MISQSQIPPD  TDAAKAAAEQ  EEEFINLLQL  SDIEFRGETI  YFIVVDRFFN  GDPGNDEGPD60
PSLYDPERRD  WGKYWGGDLE  GIIAKLDYLQ  KLGVTAIWVT  PLFEQIEAMS  WEAAPIHGYW120
TRDFKRINAR  WVSGPEEVRL  FERNDTTFDR  LIKALHERGM  KLILDVVCNH  SSPDAAGIKG180
QLFDDGKLIA  DFNDDKDFWY  HHYGEVSDWN  DEWQVQNCEL  AGLATFNENN  IHYRNYIKGA240
IKLWLDKGVD  ALRVDTVKHM  PIWFWQEFNS  DIQAHKPDVF  VFGEWIYSHP  LSERSVEFAN300
FSGMSMLDFG  LCIAIRQALA  QADPSGFHLI  EDVFREDWRY  RGATELVTFI  DNHDMPRFQS360
LGADDETLRL  AVDLIMLSRG  IPCLYYGTEQ  YLHDDTDGGN  DPYNRPMMAL  WDERTPLFRD420
LHRLSAVRRR  NPAVKWGGQW  TRYINPDIYA  FVRKYRDARC  FVALNRSIET  VLVEDVLTEL480
PDGTHRCVLS  GEDYTIKAGR  LEKLELAPRQ  VVVLSVTGKP  VRGRQVARIQ  LNGIRTRPGE540
IVAIVGDCPE  LGNWDRDQAV  ALEYINENTW  LGEVAIKQSA  DKIISYKYVV  LREQGQPIYE600
NRTSRRRFAP  NGTIAKWRDI  WEE623

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help