CAZyme3D

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Entry ID

Information for CAZyme ID: AGY54522.1

Basic Information

GenBank IDAGY54522.1
FamilyGH18
Sequence Length376
UniProt IDU5Q7H9(100,100)Download
Average pLDDT?90.21
CAZy50 ID49174
CAZy50 RepNo, QDO69853.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1400053
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
Family
Genus
SpeciesBacteroidales bacterium CF

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKNIALFAV  FIAMLIISGC  EKDNLDPDSP  GEKPQVYEPA  KKVEGRVAVA  YVTYWGTAIP60
DARLLTHINY  AFAELYVENG  VYKGFKLQGK  EERFRQIVAL  KNQYPDLKIL  ISFIHTVDNP120
DNSQGGGFSA  LSKSEEYRKA  FAQDCLDFIN  RWGIDGVDID  WEFPGLSWSG  HACDPAVDTD180
NYTLLMKQLR  ETLGSNHLLT  YAGYVKDRQV  TSSGGSRYID  VAAVAPYVDW  VNIMTYNMDT240
APHHHSALKD  ATAYWDCERA  VNAYLSKGVP  ANKLVLGIPF  YGSHSYSEKP  TSLNYNSIIK300
LDRNIYKIDN  WDNAASVPFV  TKNGVYFCGY  DNQRSISIKG  AWILSRGMKG  LMYWSYDADD360
AAGTLRKAVW  EATMKR376

Predicted 3D structure by AlphaFold2 with pLDDT = 90.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(49-364)

MKKNIALFAV  FIAMLIISGC  EKDNLDPDSP  GEKPQVYEPA  KKVEGRVAVA  YVTYWGTAIP60
DARLLTHINY  AFAELYVENG  VYKGFKLQGK  EERFRQIVAL  KNQYPDLKIL  ISFIHTVDNP120
DNSQGGGFSA  LSKSEEYRKA  FAQDCLDFIN  RWGIDGVDID  WEFPGLSWSG  HACDPAVDTD180
NYTLLMKQLR  ETLGSNHLLT  YAGYVKDRQV  TSSGGSRYID  VAAVAPYVDW  VNIMTYNMDT240
APHHHSALKD  ATAYWDCERA  VNAYLSKGVP  ANKLVLGIPF  YGSHSYSEKP  TSLNYNSIIK300
LDRNIYKIDN  WDNAASVPFV  TKNGVYFCGY  DNQRSISIKG  AWILSRGMKG  LMYWSYDADD360
AAGTLRKAVW  EATMKR376

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help