CAZyme3D

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Entry ID

Information for CAZyme ID: AGV77131.1

Basic Information

GenBank IDAGV77131.1
FamilyGH13_8
Sequence Length243
UniProt IDT2FF72(100,100)Download
Average pLDDT?98.11
CAZy50 ID937
CAZy50 RepNo, CAG7908015.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID401067
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderRosales
FamilyRosaceae
GenusPygeum
SpeciesPygeum topengii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

IYEAHVGMSS  SEPRISSYRE  FADDVLPRIQ  ANNYNTVQLM  AVMEHSYYAS  FGYHVTNFFA60
VSSRSGTPED  LKYLIDKAHC  LGLRVLMDVV  HSHASNNVTD  GLNGFEVGQS  SQESYFHTGD120
RGYHKLWDSR  LFNYSNWEVL  RFLLSNLRWW  LEEFKFDGFR  FDGVTSMLYH  HHGINMTFTG180
DYHEYFSEAT  DVDAVVYLML  ANSLIHKILP  DATVIAEDVS  GMPGLGRPVS  EGGSGFDYRL240
AMA243

Predicted 3D structure by AlphaFold2 with pLDDT = 98.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_8(50-243)

IYEAHVGMSS  SEPRISSYRE  FADDVLPRIQ  ANNYNTVQLM  AVMEHSYYAS  FGYHVTNFFA60
VSSRSGTPED  LKYLIDKAHC  LGLRVLMDVV  HSHASNNVTD  GLNGFEVGQS  SQESYFHTGD120
RGYHKLWDSR  LFNYSNWEVL  RFLLSNLRWW  LEEFKFDGFR  FDGVTSMLYH  HHGINMTFTG180
DYHEYFSEAT  DVDAVVYLML  ANSLIHKILP  DATVIAEDVS  GMPGLGRPVS  EGGSGFDYRL240
AMA243

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help