Information for CAZyme ID: AGV17286.1
Basic Information
| GenBank ID | AGV17286.1 |
| Family | CBM5, CBM73, GH18 |
| Sequence Length | 848 |
| UniProt ID | A0A2I3C8L7(100,100) |
| Average pLDDT? | 87.06 |
| CAZy50 ID | 19903 |
| CAZy50 Rep | No, AXN14485.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1219076 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio alginolyticus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKVTLLHGAM IVALSASYQA QAYNCQSLPD WDSTATYTSG ALVKTQGAAY EAAYWTQGND | 60 |
| PVTNSGSWEA WKALGQCDGG SNNLSPTVSF SSPINNAQIP EGSAITLLAN AADEDGQITQ | 120 |
| IEFVAGNQTV AVVTQAPFEA SWTAIEGISQ LTAIATDNEG AVSTTTISIQ VQPQVELPPP | 180 |
| SISLTSPVGT EVLNVGDNLT VAAQADDIDG VVTQVEFFVN NQSVAIDTSA PYEYQWTASP | 240 |
| GTYSFKAQAT DDTNLATMSQ EVALVISNSE TGTGGCADAV PYVAGTSYQA GDLVSHFNQK | 300 |
| YRCDVAGWCS SDATWAYEPG EGLYWQDAWS GLGACSTPPQ VTITAPTDGQ VVLAGSNNEI | 360 |
| TANASDADGT VTQVEFFANN TSLGVTTQAP YSVTWNATLI GANQLKAVAT DNDNNTSESL | 420 |
| VGVEVSDKDL VVSLTSPSSG QTAGLGKSLA LSADATSLTS GIKHVDFMIN GSIVATDTTA | 480 |
| PYTANWTPTA LGNFTVSAQA VDLSGTNALS DAAAITVVEQ IDKRHKLIGY WHNFVNGAGC | 540 |
| PIRLADMADA WDVIDIAFAE NDRNSDGTVH FNLYSGDIYS DCPALDPTQF KQDMAALQAK | 600 |
| GKKFVLSLGG AEGTITLNTD QDEANFVSSL TGLIAEWGFD GLDVDLESGS NLVHGSQIQA | 660 |
| RLGRALLQIE QNMGGDMYLT MAPEHPYVQG GYVAYSGIWG AYIPVINETR STLDLLHVQL | 720 |
| YNNGGLPNPY LPGSAPEGSV DMMVAQSKML IEGFELADGT QFAPLRDDQV AIGLPSGPSS | 780 |
| ANSGQAPTQN IINALDCLTK GTSCGTVKPA YHYPNYAGVM TWSINWDQHD GFNFSKPVGD | 840 |
| KLTEMNTQ | 848 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.06 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM5(29-68)+CBM73(282-330)+GH18(524-830)
| MKVTLLHGAM IVALSASYQA QAYNCQSLPD WDSTATYTSG ALVKTQGAAY EAAYWTQGND | 60 |
| PVTNSGSWEA WKALGQCDGG SNNLSPTVSF SSPINNAQIP EGSAITLLAN AADEDGQITQ | 120 |
| IEFVAGNQTV AVVTQAPFEA SWTAIEGISQ LTAIATDNEG AVSTTTISIQ VQPQVELPPP | 180 |
| SISLTSPVGT EVLNVGDNLT VAAQADDIDG VVTQVEFFVN NQSVAIDTSA PYEYQWTASP | 240 |
| GTYSFKAQAT DDTNLATMSQ EVALVISNSE TGTGGCADAV PYVAGTSYQA GDLVSHFNQK | 300 |
| YRCDVAGWCS SDATWAYEPG EGLYWQDAWS GLGACSTPPQ VTITAPTDGQ VVLAGSNNEI | 360 |
| TANASDADGT VTQVEFFANN TSLGVTTQAP YSVTWNATLI GANQLKAVAT DNDNNTSESL | 420 |
| VGVEVSDKDL VVSLTSPSSG QTAGLGKSLA LSADATSLTS GIKHVDFMIN GSIVATDTTA | 480 |
| PYTANWTPTA LGNFTVSAQA VDLSGTNALS DAAAITVVEQ IDKRHKLIGY WHNFVNGAGC | 540 |
| PIRLADMADA WDVIDIAFAE NDRNSDGTVH FNLYSGDIYS DCPALDPTQF KQDMAALQAK | 600 |
| GKKFVLSLGG AEGTITLNTD QDEANFVSSL TGLIAEWGFD GLDVDLESGS NLVHGSQIQA | 660 |
| RLGRALLQIE QNMGGDMYLT MAPEHPYVQG GYVAYSGIWG AYIPVINETR STLDLLHVQL | 720 |
| YNNGGLPNPY LPGSAPEGSV DMMVAQSKML IEGFELADGT QFAPLRDDQV AIGLPSGPSS | 780 |
| ANSGQAPTQN IINALDCLTK GTSCGTVKPA YHYPNYAGVM TWSINWDQHD GFNFSKPVGD | 840 |
| KLTEMNTQ | 848 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.