Information for CAZyme ID: AGT42863.1
Basic Information
GenBank ID | AGT42863.1 |
Family | GH171 |
Sequence Length | 404 |
UniProt ID | S5ZY06(100,100)![]() |
Average pLDDT? | 91.72 |
CAZy50 ID | 87964 |
CAZy50 Rep | No, UTC47863.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1291379 |
Kingdom | Bacteria |
Phylum | Spirochaetota |
Class | Spirochaetia |
Order | Spirochaetales |
Family | Treponemataceae |
Genus | Treponema |
Species | Treponema pedis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKKSAVIFYL LILPIFLFTQ ENGRIVLGID RIKEFEHLFK NKRVGLITNQ TGINSEGKTS | 60 |
IDVLYKTVNL TALFSPEHGI RGNEREGAII ENRIDLKTGL TVYSLYGKTK RPSEEMLKNI | 120 |
DILCFDIQDI GARFYTYIWT MAYAMEECAK HKKTFVVFDR PNPINGVNVE GNILNEEYKS | 180 |
FVGYFPIIQR HGMTVGELAL MFNKEFKINC NLQIIPLKNW NRENCFEELN LMWVPTSPNI | 240 |
PTAETALIYS GLCIFEGVNI SVGRGTAMPF KYIGAPFIDA ENLAEELNAL NLKGVFFLPT | 300 |
YFTPALSLYK NEFCKGIQII VTDKKEFLPV KTSILIMEKI KKMYPENFSV NDSKRKLCGL | 360 |
NLLTGTNLLT SILLHDKTKL EEYFKVIRKD EIQFSKLRKK YLLY | 404 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.72 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH171(44-404)
MKKSAVIFYL LILPIFLFTQ ENGRIVLGID RIKEFEHLFK NKRVGLITNQ TGINSEGKTS | 60 |
IDVLYKTVNL TALFSPEHGI RGNEREGAII ENRIDLKTGL TVYSLYGKTK RPSEEMLKNI | 120 |
DILCFDIQDI GARFYTYIWT MAYAMEECAK HKKTFVVFDR PNPINGVNVE GNILNEEYKS | 180 |
FVGYFPIIQR HGMTVGELAL MFNKEFKINC NLQIIPLKNW NRENCFEELN LMWVPTSPNI | 240 |
PTAETALIYS GLCIFEGVNI SVGRGTAMPF KYIGAPFIDA ENLAEELNAL NLKGVFFLPT | 300 |
YFTPALSLYK NEFCKGIQII VTDKKEFLPV KTSILIMEKI KKMYPENFSV NDSKRKLCGL | 360 |
NLLTGTNLLT SILLHDKTKL EEYFKVIRKD EIQFSKLRKK YLLY | 404 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.