CAZyme3D

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Entry ID

Information for CAZyme ID: AGT42863.1

Basic Information

GenBank IDAGT42863.1
FamilyGH171
Sequence Length404
UniProt IDS5ZY06(100,100)Download
Average pLDDT?91.72
CAZy50 ID87964
CAZy50 RepNo, UTC47863.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1291379
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pedis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKSAVIFYL  LILPIFLFTQ  ENGRIVLGID  RIKEFEHLFK  NKRVGLITNQ  TGINSEGKTS60
IDVLYKTVNL  TALFSPEHGI  RGNEREGAII  ENRIDLKTGL  TVYSLYGKTK  RPSEEMLKNI120
DILCFDIQDI  GARFYTYIWT  MAYAMEECAK  HKKTFVVFDR  PNPINGVNVE  GNILNEEYKS180
FVGYFPIIQR  HGMTVGELAL  MFNKEFKINC  NLQIIPLKNW  NRENCFEELN  LMWVPTSPNI240
PTAETALIYS  GLCIFEGVNI  SVGRGTAMPF  KYIGAPFIDA  ENLAEELNAL  NLKGVFFLPT300
YFTPALSLYK  NEFCKGIQII  VTDKKEFLPV  KTSILIMEKI  KKMYPENFSV  NDSKRKLCGL360
NLLTGTNLLT  SILLHDKTKL  EEYFKVIRKD  EIQFSKLRKK  YLLY404

Predicted 3D structure by AlphaFold2 with pLDDT = 91.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(44-404)

MKKSAVIFYL  LILPIFLFTQ  ENGRIVLGID  RIKEFEHLFK  NKRVGLITNQ  TGINSEGKTS60
IDVLYKTVNL  TALFSPEHGI  RGNEREGAII  ENRIDLKTGL  TVYSLYGKTK  RPSEEMLKNI120
DILCFDIQDI  GARFYTYIWT  MAYAMEECAK  HKKTFVVFDR  PNPINGVNVE  GNILNEEYKS180
FVGYFPIIQR  HGMTVGELAL  MFNKEFKINC  NLQIIPLKNW  NRENCFEELN  LMWVPTSPNI240
PTAETALIYS  GLCIFEGVNI  SVGRGTAMPF  KYIGAPFIDA  ENLAEELNAL  NLKGVFFLPT300
YFTPALSLYK  NEFCKGIQII  VTDKKEFLPV  KTSILIMEKI  KKMYPENFSV  NDSKRKLCGL360
NLLTGTNLLT  SILLHDKTKL  EEYFKVIRKD  EIQFSKLRKK  YLLY404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help