CAZyme3D

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Entry ID

Information for CAZyme ID: AGT36602.1

Basic Information

GenBank IDAGT36602.1
FamilyCBM20
Sequence Length678
UniProt IDS5ZB27(100,100)Download
Average pLDDT?83.64
CAZy50 ID40371
CAZy50 RepNo, QFF91344.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID9031
KingdomEukaryota
PhylumChordata
ClassAves
OrderGalliformes
FamilyPhasianidae
GenusGallus
SpeciesGallus gallus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTSSQVTFEV  RGPSVPGEVF  AICGSCSALG  SWNPQAAVVL  QTDDCELWKA  TIELPRGVPV60
KYRYFKGYFL  KPKTIDGPCE  VIVHTWETHL  QPRSITPLEN  EMTIDDGYFG  IHNGIETVDA120
GWLTCQTEIR  LRLHYSEKSP  VMISKKKFKT  SRFRVKLTLE  GLEKDDDDEE  GQEKTSPTVP180
QKMANTVEFS  LISNNEYKCR  HSQPDCGYAL  QSDRWLEYTI  QTMEPDNLEL  IFDFFEEDLS240
EKVVQDDEHP  GHVGSACLLS  STIAESGKSA  GILTLAIMGR  NPRKTIGKVR  VDYLIIKPIQ300
GYTCDMKASY  AKYWKPRTTL  DVGHRGAGNS  TTTAKLAKVQ  ENTIASLRNA  ASHGAAYVEF360
DVHLSKDHVP  IVYHDLTCCM  AMKKKLDTEP  LELFEIAVKE  LTFDQLQLLK  LAHVTALKVK420
DHNASFKEEE  NSAYETQPFP  SLQRVLESVS  EDVGFNIEIK  WICQQKDGQW  DGNLSTYFDM480
NLFLDIILKT  VLMNAGRRGI  VFSSFNADIC  TMVRHKQNKY  PVLFLTQGES  KLYPELMDLR540
SRTTPIAITF  AQFENLLGVN  VHSEDLLRNP  LYIKRAISKG  LVIFSWGDDA  NDPDNRKKLK600
EYGVHGLIYD  RIYDSNPEQP  NIFQVEQLER  LKKELPELKS  CVCPTVSHFK  SISPCKCHHS660
CLEEKAVDNL  QSVQMQKD678

Predicted 3D structure by AlphaFold2 with pLDDT = 83.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(5-67)

MTSSQVTFEV  RGPSVPGEVF  AICGSCSALG  SWNPQAAVVL  QTDDCELWKA  TIELPRGVPV60
KYRYFKGYFL  KPKTIDGPCE  VIVHTWETHL  QPRSITPLEN  EMTIDDGYFG  IHNGIETVDA120
GWLTCQTEIR  LRLHYSEKSP  VMISKKKFKT  SRFRVKLTLE  GLEKDDDDEE  GQEKTSPTVP180
QKMANTVEFS  LISNNEYKCR  HSQPDCGYAL  QSDRWLEYTI  QTMEPDNLEL  IFDFFEEDLS240
EKVVQDDEHP  GHVGSACLLS  STIAESGKSA  GILTLAIMGR  NPRKTIGKVR  VDYLIIKPIQ300
GYTCDMKASY  AKYWKPRTTL  DVGHRGAGNS  TTTAKLAKVQ  ENTIASLRNA  ASHGAAYVEF360
DVHLSKDHVP  IVYHDLTCCM  AMKKKLDTEP  LELFEIAVKE  LTFDQLQLLK  LAHVTALKVK420
DHNASFKEEE  NSAYETQPFP  SLQRVLESVS  EDVGFNIEIK  WICQQKDGQW  DGNLSTYFDM480
NLFLDIILKT  VLMNAGRRGI  VFSSFNADIC  TMVRHKQNKY  PVLFLTQGES  KLYPELMDLR540
SRTTPIAITF  AQFENLLGVN  VHSEDLLRNP  LYIKRAISKG  LVIFSWGDDA  NDPDNRKKLK600
EYGVHGLIYD  RIYDSNPEQP  NIFQVEQLER  LKKELPELKS  CVCPTVSHFK  SISPCKCHHS660
CLEEKAVDNL  QSVQMQKD678

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help