Information for CAZyme ID: AGT17345.1
Basic Information
| GenBank ID | AGT17345.1 |
| Family | GH47 |
| Sequence Length | 642 |
| UniProt ID | A0A059Q2E4(100,100) |
| Average pLDDT? | 82.60 |
| CAZy50 ID | 38481 |
| CAZy50 Rep | No, CAY06021.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 131158 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Poales |
| Family | Poaceae |
| Genus | Saccharum |
| Species | Saccharum hybrid cultivar |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSGTSGPLPY SMRDVGAGGA YNNAKFRHRS RLKMVLQSLS TNSSKYRCGK FTVGKFLSLL | 60 |
| MVSGLLYLFL HKGSEDIVSS ELHGKEVQNK NARRAPNIRT FWRKPPRLPP RLPPNEIYKN | 120 |
| NSLLQQSPSE WTSRQKKVKE AFEYAWSGYQ KYAMGYDELM PLSHRGTDGL GGLGATIVDS | 180 |
| LDTAIIMGAD DVVSEASKWI EDNLMKRISE KGQVNLFETT IRVLGGLLSA YHLSGGDHPG | 240 |
| AGDSGVPVTY KKANPERLLE VSKDLADRLL LAFTSSPTAI PLSDVILRDH TAHAAPDGLS | 300 |
| STSEASTLQL EFSYLSKVSG DPKYDRAAMK VLEHMHTLPK VEGLVPIYIN PSSGQFSGEN | 360 |
| IRLGSRGDSY YEYLLKVWVQ QEEYRDSSLK YLFEMYTEAM RGVKHLLVRK TVPNGLVFVG | 420 |
| ELPSGRNGGF SPKMDHLVCF LPGTLALGAT KGITKRKALE SNLLTDEDKE NLQLAEDLAK | 480 |
| TCVEMYFVTS TGLAPEIAYF HIEGDTEGGP DGGNKSSKYI NDIIIKPLDH HNLLRPEAVE | 540 |
| SLFVLYRITE DPKYREWGWQ IFQAFEKYTK VDSGGYTSLD DVTSLPPPTR DKMETFFLGE | 600 |
| TLKYLYLLFD ENNTLPLDKY VFNTEAHPLP VMRSTERDSH SV | 642 |
Predicted 3D structure by AlphaFold2 with pLDDT = 82.60 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH47(141-631)
| MSGTSGPLPY SMRDVGAGGA YNNAKFRHRS RLKMVLQSLS TNSSKYRCGK FTVGKFLSLL | 60 |
| MVSGLLYLFL HKGSEDIVSS ELHGKEVQNK NARRAPNIRT FWRKPPRLPP RLPPNEIYKN | 120 |
| NSLLQQSPSE WTSRQKKVKE AFEYAWSGYQ KYAMGYDELM PLSHRGTDGL GGLGATIVDS | 180 |
| LDTAIIMGAD DVVSEASKWI EDNLMKRISE KGQVNLFETT IRVLGGLLSA YHLSGGDHPG | 240 |
| AGDSGVPVTY KKANPERLLE VSKDLADRLL LAFTSSPTAI PLSDVILRDH TAHAAPDGLS | 300 |
| STSEASTLQL EFSYLSKVSG DPKYDRAAMK VLEHMHTLPK VEGLVPIYIN PSSGQFSGEN | 360 |
| IRLGSRGDSY YEYLLKVWVQ QEEYRDSSLK YLFEMYTEAM RGVKHLLVRK TVPNGLVFVG | 420 |
| ELPSGRNGGF SPKMDHLVCF LPGTLALGAT KGITKRKALE SNLLTDEDKE NLQLAEDLAK | 480 |
| TCVEMYFVTS TGLAPEIAYF HIEGDTEGGP DGGNKSSKYI NDIIIKPLDH HNLLRPEAVE | 540 |
| SLFVLYRITE DPKYREWGWQ IFQAFEKYTK VDSGGYTSLD DVTSLPPPTR DKMETFFLGE | 600 |
| TLKYLYLLFD ENNTLPLDKY VFNTEAHPLP VMRSTERDSH SV | 642 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.