CAZyme3D

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Entry ID

Information for CAZyme ID: AGS52097.1

Basic Information

GenBank IDAGS52097.1
FamilyCBM35, GH26
Sequence Length554
UniProt IDA0A806JYQ2(100,100)Download
Average pLDDT?88.94
CAZy50 ID57158
CAZy50 RepNo, AGS54419.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1181518
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium contig00029

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKQFFLLMLV  FSSISAFATQ  YPATSATRGD  DAAVNGNYVE  MKDGSLTFSV  SVTSRGMYEL60
VVRYRQTYGD  KKEQNLVVNG  SNAGKLVFPQ  TSAWADLKSV  VSLNQGSNTV  AITKDWGWVD120
IQYIEINPHE  NTPFNLDKSL  VNPSANEAAK  KIFAFMQENF  QKKVISGVMT  EAVLSGNNAV180
TLNNQEEISF  IRQSSSNKTP  ALVGFDFMHA  TGKEMENAGT  TGNWFKNYTS  ATVSLAKELY240
QRGGIPAYSW  HWRDPLKNEK  GFYSPSADAD  NSDKTNFDLT  TACTNLNCTA  WNTSSMPYQK300
MVEDIDIVAD  YLKELQDAGV  AVLWRPIHEA  SGGWFWWGYK  GAAAYKLLYK  LIFDRLTTHH360
GLNNLIWVWD  SQGGGDPDWY  PGNNYVDIIG  RDFYYYPAVK  NHASLIGEFE  ALKNAFGTTK420
MIALTENGSV  PYPENLIDDG  AGWSYFMPWY  REWTNSPTHN  VASDWDKIMN  HEYVITLEDM480
PGWNNYEIPI  TPIHPSTPQT  SQRINLATLD  FSTAKVYDMR  GNRVSVNSFE  NLKGLPAGVY540
IVKTPAGRTL  YTSK554

Predicted 3D structure by AlphaFold2 with pLDDT = 88.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(36-126)+GH26(141-478)

MKQFFLLMLV  FSSISAFATQ  YPATSATRGD  DAAVNGNYVE  MKDGSLTFSV  SVTSRGMYEL60
VVRYRQTYGD  KKEQNLVVNG  SNAGKLVFPQ  TSAWADLKSV  VSLNQGSNTV  AITKDWGWVD120
IQYIEINPHE  NTPFNLDKSL  VNPSANEAAK  KIFAFMQENF  QKKVISGVMT  EAVLSGNNAV180
TLNNQEEISF  IRQSSSNKTP  ALVGFDFMHA  TGKEMENAGT  TGNWFKNYTS  ATVSLAKELY240
QRGGIPAYSW  HWRDPLKNEK  GFYSPSADAD  NSDKTNFDLT  TACTNLNCTA  WNTSSMPYQK300
MVEDIDIVAD  YLKELQDAGV  AVLWRPIHEA  SGGWFWWGYK  GAAAYKLLYK  LIFDRLTTHH360
GLNNLIWVWD  SQGGGDPDWY  PGNNYVDIIG  RDFYYYPAVK  NHASLIGEFE  ALKNAFGTTK420
MIALTENGSV  PYPENLIDDG  AGWSYFMPWY  REWTNSPTHN  VASDWDKIMN  HEYVITLEDM480
PGWNNYEIPI  TPIHPSTPQT  SQRINLATLD  FSTAKVYDMR  GNRVSVNSFE  NLKGLPAGVY540
IVKTPAGRTL  YTSK554

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help