CAZyme3D

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Entry ID

Information for CAZyme ID: AGR60880.1

Basic Information

GenBank IDAGR60880.1
FamilyGH8
Sequence Length369
UniProt IDS5NE06(100,100)Download
Average pLDDT?93.63
CAZy50 ID97690
CAZy50 RepNo, AJR01156.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1197719
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella bongori

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMTMLRGWIT  IVVMLTAMNA  QAACTWPAWE  QFKKDYMSQQ  GRVIDPGDAR  KITTSEGQSY60
AMFFALAAND  RPAFAQLFNW  TQNNLAQGSL  HEHLPAWLWG  QKDPDTWEVL  DSNSASDGDI120
WMAWSLLEAG  RLWKETRYTE  AGTALLKRIA  REEVVNVPGL  GSMLLPGKIG  FAEANSWRFN180
PSYLPPQLAQ  YFSRFGAPWS  TLRETNLRLL  LETAPKGFSP  DWVRYEKKQG  WQLKPEKTLI240
SSYDAIRVYL  WAGMMHDGDP  QKARLLARFK  PMATLTMKNG  VPPEKVDVAN  GNAQGTGPVG300
FSAALLPFLQ  NRDAQAVQRQ  RVADHFPGND  AYYNYVLTLF  GQGWDQHRFR  FTVKGELLPD360
WGQECVSSR369

Predicted 3D structure by AlphaFold2 with pLDDT = 93.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(26-344)

MMTMLRGWIT  IVVMLTAMNA  QAACTWPAWE  QFKKDYMSQQ  GRVIDPGDAR  KITTSEGQSY60
AMFFALAAND  RPAFAQLFNW  TQNNLAQGSL  HEHLPAWLWG  QKDPDTWEVL  DSNSASDGDI120
WMAWSLLEAG  RLWKETRYTE  AGTALLKRIA  REEVVNVPGL  GSMLLPGKIG  FAEANSWRFN180
PSYLPPQLAQ  YFSRFGAPWS  TLRETNLRLL  LETAPKGFSP  DWVRYEKKQG  WQLKPEKTLI240
SSYDAIRVYL  WAGMMHDGDP  QKARLLARFK  PMATLTMKNG  VPPEKVDVAN  GNAQGTGPVG300
FSAALLPFLQ  NRDAQAVQRQ  RVADHFPGND  AYYNYVLTLF  GQGWDQHRFR  FTVKGELLPD360
WGQECVSSR369

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help