CAZyme3D

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Entry ID

Information for CAZyme ID: AGO08846.1

Basic Information

GenBank IDAGO08846.1
FamilyCBM34, GH13_20
Sequence Length574
UniProt IDA0A806IX62(100,100)Download
Average pLDDT?96.06
CAZy50 ID55630
CAZy50 RepNo, QJU51512.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1327988
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactiplantibacillus
SpeciesLactiplantibacillus plantarum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQLAGIRHRP  ESEDTAVLAA  HQLQVRLQTA  RDDVAQVEIL  FADSYLWQEG  TTALERRIMQ60
PGLATQGNQY  WQTTLTVPTN  RVVYAFLITD  TTGATVGYGE  GGFFDDVATN  WQTVGNYFHM120
PYMHVSDAEL  PPAWVKETVW  YQIFPERFAN  GVRQNDPANV  QPWGAGRVHR  DSFYGGDLPG180
ITAHLDDLAA  LGVNGLYLCP  IFTSPSNHKY  DTIDHFEIDP  HFGTKADFQA  LVDGAHARGM240
RVMLDAVFNH  FGEQSPQWQD  VIKNGEQSRF  ADWFHIHGWP  VGRDPKTKRL  NYETFATGAA300
MPKVNTQNPA  VQAYLIDVTK  YWIEQFGIDA  WRFDVADEVD  HGFWRALCGA  LRAIKPDVYL360
LGESWHSSQS  LVGNGQFNAV  MNYPLTQPIL  ALFNGQLNLE  DYVGKTNLEL  MMYRQPNQQA420
MFNALDTHDT  PRLLTTLHGQ  LTKFKSALTL  LMLLPGSPCI  YYGTEVAMAG  GADPDNRRCM480
NWQPDEQEQQ  VRQFVTRLIK  FRRQQADFLA  TSQLTWTIDG  HCLILTRTDV  EQTIQGRFNL540
GAQAVSTVSG  VSPILTAGIT  ANEMAPGGFE  LTVA574

Predicted 3D structure by AlphaFold2 with pLDDT = 96.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(6-127)+GH13_20(176-474)

MQLAGIRHRP  ESEDTAVLAA  HQLQVRLQTA  RDDVAQVEIL  FADSYLWQEG  TTALERRIMQ60
PGLATQGNQY  WQTTLTVPTN  RVVYAFLITD  TTGATVGYGE  GGFFDDVATN  WQTVGNYFHM120
PYMHVSDAEL  PPAWVKETVW  YQIFPERFAN  GVRQNDPANV  QPWGAGRVHR  DSFYGGDLPG180
ITAHLDDLAA  LGVNGLYLCP  IFTSPSNHKY  DTIDHFEIDP  HFGTKADFQA  LVDGAHARGM240
RVMLDAVFNH  FGEQSPQWQD  VIKNGEQSRF  ADWFHIHGWP  VGRDPKTKRL  NYETFATGAA300
MPKVNTQNPA  VQAYLIDVTK  YWIEQFGIDA  WRFDVADEVD  HGFWRALCGA  LRAIKPDVYL360
LGESWHSSQS  LVGNGQFNAV  MNYPLTQPIL  ALFNGQLNLE  DYVGKTNLEL  MMYRQPNQQA420
MFNALDTHDT  PRLLTTLHGQ  LTKFKSALTL  LMLLPGSPCI  YYGTEVAMAG  GADPDNRRCM480
NWQPDEQEQQ  VRQFVTRLIK  FRRQQADFLA  TSQLTWTIDG  HCLILTRTDV  EQTIQGRFNL540
GAQAVSTVSG  VSPILTAGIT  ANEMAPGGFE  LTVA574

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help