CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AGM05885.1

Basic Information

GenBank IDAGM05885.1
FamilyGH18
Sequence Length407
UniProt IDR4STM2(100,100)Download
Average pLDDT?90.78
CAZy50 ID95049
CAZy50 RepNo, AIG77401.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID129921
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis keratiniphila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRPKKLTLRL  GLCLAAVLAL  LPASPASGTP  EIEAAPPPDR  PVLEAFWGGT  PPADQVPWEM60
LNTISYWFAS  PAGGRCSTPD  AKQRKDIESL  AAVKREHPGL  TVLVSIGGWA  APGFGAGAAT120
AESRHAFVKS  CVDKWLSAFP  AGLVDGFDVD  WEFPVSGGLP  SIGNSPADRA  NFTLLLKEFR180
AQLQRYAREH  GRPARAMKLS  ADIPAGRVQD  DGTGTGGAPY  DASNSFDLRE  VGRLVDIFNL240
MTYDFCTGYS  KFSCFNDPLV  KRPGDPNDEY  NNNVGALKYM  TDHGVPREKI  VLGVPFYGRA300
FTVTSTANDG  LYQPYTAMQF  LDYKVLMGPE  WAGDPGFRKG  WDPIVRSPYL  WNPEKKIWVS360
YENPRSIQDR  SLFAKRNRLA  GMMMWELGAD  DPQHSLLAAM  TGPWLRP407

Predicted 3D structure by AlphaFold2 with pLDDT = 90.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(56-394)

MRPKKLTLRL  GLCLAAVLAL  LPASPASGTP  EIEAAPPPDR  PVLEAFWGGT  PPADQVPWEM60
LNTISYWFAS  PAGGRCSTPD  AKQRKDIESL  AAVKREHPGL  TVLVSIGGWA  APGFGAGAAT120
AESRHAFVKS  CVDKWLSAFP  AGLVDGFDVD  WEFPVSGGLP  SIGNSPADRA  NFTLLLKEFR180
AQLQRYAREH  GRPARAMKLS  ADIPAGRVQD  DGTGTGGAPY  DASNSFDLRE  VGRLVDIFNL240
MTYDFCTGYS  KFSCFNDPLV  KRPGDPNDEY  NNNVGALKYM  TDHGVPREKI  VLGVPFYGRA300
FTVTSTANDG  LYQPYTAMQF  LDYKVLMGPE  WAGDPGFRKG  WDPIVRSPYL  WNPEKKIWVS360
YENPRSIQDR  SLFAKRNRLA  GMMMWELGAD  DPQHSLLAAM  TGPWLRP407

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help