CAZyme3D

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Entry ID

Information for CAZyme ID: AGL18056.1

Basic Information

GenBank IDAGL18056.1
FamilyCBM2, GH62
Sequence Length479
UniProt IDR4LM14(100,100)Download
Average pLDDT?86.81
CAZy50 ID22371
CAZy50 RepNo, CCK27711.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID649831
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusActinoplanes
SpeciesActinoplanes sp. N902-109

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRSRPRNVA  LASAGAVLLG  STALAVALPA  GAAAAGCSVN  YTIASQWQGG  FGANVSLKNL60
GDAVSSWSLT  WTYTAGQTVT  QAWNTTLTQS  GPTVTATNVS  YNGSIGTNGE  VSFGFNGSSN120
DSNPVPTDFA  LNGVACTGQP  TTTPPVTPTT  TPPVTPTTTP  PVTPTSQPPS  SPPASCALPT180
SYRWTSTGPL  AQPKSGWASL  KDFSIAPYQG  KQLVYATTHS  SSATGGYGSM  NFGLVDNLSQ240
LGSASQNAMS  QSAVAPSLFY  FAPKNIWILA  HQWGPTSFSY  RTSTNPANAN  GWSAPQTLST300
AKITDSGTGV  IDQTIIGDDQ  NMYLFFAGDN  GKIYRQIMPI  ANFPGSFGST  YTTIMSDTSE360
NLFEAPQVYK  VQGRNQYLMI  VEARTSSWER  YFRSFTATSL  SGTWTPNAAT  YNNPFAGKAN420
SGATWTNDIS  HGELLRTSAD  QTNTIDPCNL  QLLYQGRATN  SGGDYGLLPY  RPGLLTLSR479

Predicted 3D structure by AlphaFold2 with pLDDT = 86.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(37-136)+GH62(176-449)

MTRSRPRNVA  LASAGAVLLG  STALAVALPA  GAAAAGCSVN  YTIASQWQGG  FGANVSLKNL60
GDAVSSWSLT  WTYTAGQTVT  QAWNTTLTQS  GPTVTATNVS  YNGSIGTNGE  VSFGFNGSSN120
DSNPVPTDFA  LNGVACTGQP  TTTPPVTPTT  TPPVTPTTTP  PVTPTSQPPS  SPPASCALPT180
SYRWTSTGPL  AQPKSGWASL  KDFSIAPYQG  KQLVYATTHS  SSATGGYGSM  NFGLVDNLSQ240
LGSASQNAMS  QSAVAPSLFY  FAPKNIWILA  HQWGPTSFSY  RTSTNPANAN  GWSAPQTLST300
AKITDSGTGV  IDQTIIGDDQ  NMYLFFAGDN  GKIYRQIMPI  ANFPGSFGST  YTTIMSDTSE360
NLFEAPQVYK  VQGRNQYLMI  VEARTSSWER  YFRSFTATSL  SGTWTPNAAT  YNNPFAGKAN420
SGATWTNDIS  HGELLRTSAD  QTNTIDPCNL  QLLYQGRATN  SGGDYGLLPY  RPGLLTLSR479

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help