CAZyme3D

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Entry ID

Information for CAZyme ID: AGK04542.1

Basic Information

GenBank IDAGK04542.1
FamilyGH26
Sequence Length301
UniProt IDM9X5M8(100,100)Download
Average pLDDT?96.88
CAZy50 ID126201
CAZy50 RepNo, QPM68180.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID504728
KingdomBacteria
PhylumDeinococcota
ClassDeinococci
OrderThermales
FamilyThermaceae
GenusMeiothermus
SpeciesMeiothermus ruber

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYPGQKDREE  YQITPSSLEA  YEQAVNRRVA  WVYFSNDWFA  GRDFPTATAE  WIRARNAVPY60
IRLMLRSSSE  TYVPEPLYSL  QAILRGDFDP  DLRAWGRAAQ  NFGTPLLVEW  GTEVNGQWFS120
WNGRWNGGPT  LGPERFREAY  RHIVQTIRSV  GADNLTWVWH  VDAYDDPAAE  WNRLENYYPG180
DDVVDWIGVS  VYGAQEPTEN  NSQTFADGMD  AVMPRLLRLA  PTKPVVVAEF  GVTAGNPGVN240
AVQWAEAALT  DLLANRWPAV  RGFSWWNEAF  DQTEMRVQVI  PGLREVFRSK  LDSPKVLDHP300
L301

Predicted 3D structure by AlphaFold2 with pLDDT = 96.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH26(88-266)

MYPGQKDREE  YQITPSSLEA  YEQAVNRRVA  WVYFSNDWFA  GRDFPTATAE  WIRARNAVPY60
IRLMLRSSSE  TYVPEPLYSL  QAILRGDFDP  DLRAWGRAAQ  NFGTPLLVEW  GTEVNGQWFS120
WNGRWNGGPT  LGPERFREAY  RHIVQTIRSV  GADNLTWVWH  VDAYDDPAAE  WNRLENYYPG180
DDVVDWIGVS  VYGAQEPTEN  NSQTFADGMD  AVMPRLLRLA  PTKPVVVAEF  GVTAGNPGVN240
AVQWAEAALT  DLLANRWPAV  RGFSWWNEAF  DQTEMRVQVI  PGLREVFRSK  LDSPKVLDHP300
L301

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help