CAZyme3D

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Entry ID

Information for CAZyme ID: AGI74628.1

Basic Information

GenBank IDAGI74628.1
FamilyGT14
Sequence Length558
UniProt IDM9RSA1(100,100)Download
Average pLDDT?89.07
CAZy50 ID55300
CAZy50 RepNo, ANP37249.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID391616
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOctadecabacter
SpeciesOctadecabacter arcticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLVHNAFDRA  EQVVRHWAAA  GCPVVIHVDK  NVKFATYDAF  VKSVADLPDV  MFSKRHRCEW60
GTWGIVAASQ  SASSMMLNNF  ADVRHVYLAS  GSCLPLRPIK  DLQSYLEKRP  RTDFIESATT120
ADVPWTQGGL  DFERFTLRFP  FSWRKHRMLF  DRYVDFQRRF  KMYRRVPEGI  VPHMGSQWWC180
LTRQTLSAIL  EDPDRAVYDR  YFKRVWIPDE  SYFQTLVRLY  SQSIESRSLT  LSKFDYQGKP240
HIFYDDHLQL  LRRSDCFVAR  KIWPHANRLY  DNFLNEENPL  KGAEPNPGKI  DRIFSKAVER300
RTRGRAGLFM  QSRLPRPGYE  NGFTSAPYSV  FEGFAELFED  FEPWLGRMTG  TRVHGHLYAK360
DRVEFEGRQK  TFSGALCDNA  KLRDHHAQSF  LVNLIWNTRG  ERQCFQFGPM  DSQLVSWDLA420
KDPNAQISVI  SGAWAIPLFQ  SNRNFSDIRA  HAAELQRIES  EHLDALRSTW  VKARIRIWTL480
ADFIETPMEA  LQTVLDEMGA  KNLRRVTEAP  KMADLTGFSQ  FLQNLKNQGM  HPYLMGDFPS540
DAGPTAQRPS  RRKPYLVR558

Predicted 3D structure by AlphaFold2 with pLDDT = 89.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT14(1-241)

MLVHNAFDRA  EQVVRHWAAA  GCPVVIHVDK  NVKFATYDAF  VKSVADLPDV  MFSKRHRCEW60
GTWGIVAASQ  SASSMMLNNF  ADVRHVYLAS  GSCLPLRPIK  DLQSYLEKRP  RTDFIESATT120
ADVPWTQGGL  DFERFTLRFP  FSWRKHRMLF  DRYVDFQRRF  KMYRRVPEGI  VPHMGSQWWC180
LTRQTLSAIL  EDPDRAVYDR  YFKRVWIPDE  SYFQTLVRLY  SQSIESRSLT  LSKFDYQGKP240
HIFYDDHLQL  LRRSDCFVAR  KIWPHANRLY  DNFLNEENPL  KGAEPNPGKI  DRIFSKAVER300
RTRGRAGLFM  QSRLPRPGYE  NGFTSAPYSV  FEGFAELFED  FEPWLGRMTG  TRVHGHLYAK360
DRVEFEGRQK  TFSGALCDNA  KLRDHHAQSF  LVNLIWNTRG  ERQCFQFGPM  DSQLVSWDLA420
KDPNAQISVI  SGAWAIPLFQ  SNRNFSDIRA  HAAELQRIES  EHLDALRSTW  VKARIRIWTL480
ADFIETPMEA  LQTVLDEMGA  KNLRRVTEAP  KMADLTGFSQ  FLQNLKNQGM  HPYLMGDFPS540
DAGPTAQRPS  RRKPYLVR558

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help