CAZyme3D

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Entry ID

Information for CAZyme ID: AGH86242.1

Basic Information

GenBank IDAGH86242.1
FamilyCE4, GH153
Sequence Length709
UniProt IDM4ULZ0(100,100)Download
Average pLDDT?89.72
CAZy50 ID35177
CAZy50 RepNo, CCA83834.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1262456
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia pseudosolanacearum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAVLAMALLA  FARPAAALQV  DFLPKPDPVD  GKTFRVLCFH  DIRDNLRASF  ETLPDPFAID60
TKMLTNMFSW  LQANGYHPVT  LDQIGEARRG  GKPLPSRPIL  LTFDDGYESH  YTRVFPLLKQ120
FRFPAVFALV  TQWTDAPQGA  KVKLSDKQIV  GRDFFMNWDQ  IREIQASGLV  EFATHTHDMH180
HGMLGNPQGN  EMPAASTHGY  LPKLGRYETD  DEYRKRVRGD  LQRSIDIIQK  YTGAKVQSVV240
WPYGAHNLTL  DQEAANVGLK  YMLTLEPGPN  TPDAPLTAIR  RSLMGYDTDT  GSLERSLREP300
LTHHGEINPV  QRVVQVDMDY  IYDADPRQQE  ANLGRLIERI  KDLAPKVVYL  QAFADPKGDG360
AVDSVYFPNR  HMPMRADLFS  RVAWQLKTRA  KVEVYAWLPV  LAFKLPEKNP  ASTHLVQAVP420
GAPEKQKAGK  PPRLSPFDPE  ARRMIRDIYE  DLAKYAIFDG  ILFHDDAVLD  DYEDASPAAL480
KAYEAMGLPG  DINAIRRSPE  LMQKWTRGKT  AALIAFTHEL  IGVVQGYQNG  RDMLTARNIF540
ASPILDPDAE  KWTAQNYDDF  LQAYDYVALE  AMPYMENARD  PKDWMAKLVA  AVGRHRDGLR600
KTIFELQAVD  WRERDKPVPT  PELRDQMRRL  RAAGALNYGY  YPDDFIAGRP  DTEVLRDVMS660
MKTTIETRRV  PSRAEELKSI  PPTTAPGAAN  AEQHNPVAGA  GGQATGAGG709

Predicted 3D structure by AlphaFold2 with pLDDT = 89.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(93-262)+GH153(311-660)

MAVLAMALLA  FARPAAALQV  DFLPKPDPVD  GKTFRVLCFH  DIRDNLRASF  ETLPDPFAID60
TKMLTNMFSW  LQANGYHPVT  LDQIGEARRG  GKPLPSRPIL  LTFDDGYESH  YTRVFPLLKQ120
FRFPAVFALV  TQWTDAPQGA  KVKLSDKQIV  GRDFFMNWDQ  IREIQASGLV  EFATHTHDMH180
HGMLGNPQGN  EMPAASTHGY  LPKLGRYETD  DEYRKRVRGD  LQRSIDIIQK  YTGAKVQSVV240
WPYGAHNLTL  DQEAANVGLK  YMLTLEPGPN  TPDAPLTAIR  RSLMGYDTDT  GSLERSLREP300
LTHHGEINPV  QRVVQVDMDY  IYDADPRQQE  ANLGRLIERI  KDLAPKVVYL  QAFADPKGDG360
AVDSVYFPNR  HMPMRADLFS  RVAWQLKTRA  KVEVYAWLPV  LAFKLPEKNP  ASTHLVQAVP420
GAPEKQKAGK  PPRLSPFDPE  ARRMIRDIYE  DLAKYAIFDG  ILFHDDAVLD  DYEDASPAAL480
KAYEAMGLPG  DINAIRRSPE  LMQKWTRGKT  AALIAFTHEL  IGVVQGYQNG  RDMLTARNIF540
ASPILDPDAE  KWTAQNYDDF  LQAYDYVALE  AMPYMENARD  PKDWMAKLVA  AVGRHRDGLR600
KTIFELQAVD  WRERDKPVPT  PELRDQMRRL  RAAGALNYGY  YPDDFIAGRP  DTEVLRDVMS660
MKTTIETRRV  PSRAEELKSI  PPTTAPGAAN  AEQHNPVAGA  GGQATGAGG709

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help