CAZyme3D

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Entry ID

Information for CAZyme ID: AGG15375.1

Basic Information

GenBank IDAGG15375.1
FamilyGT35
Sequence Length559
UniProt IDM1RTI5(100,100)Download
Average pLDDT?94.84
CAZy50 ID58120
CAZy50 RepNo, AGH93677.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID547144
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyAquificaceae
GenusHydrogenobaculum
SpeciesHydrogenobaculum sp. HO

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIAYFVMECG  IEPYIPTYSG  GLGVLAGDTL  QSLADLKVPS  VGVTILWRKG  YTSQHLTAHG60
AQTDFPQTWD  PSKYLKPLDI  KIKIPVNGQD  IYVTAWKYDM  VGISGHVVPV  LFLDTNLKEN120
QPEIRQIFDR  LYLAQGKDRM  LQEIIFGVGG  YELLKVLGYK  IMVYHINESH  SAFLTIGLLK180
DLQDIEKVRD  RVVFVTHTPV  AAAFDKFPID  DVKTYLKDYI  KDTNMEDLFD  HDQEFNLSWI240
SLKASRTVAA  VSRKHKYVSE  GIFEGYKLEY  VTNGVHHIRW  ASPHHKKLYT  EFIRGWEEDP300
SLLRQITNVP  DQIFIQAHQK  AKEDLIDLVN  SQTDASFSRD  WFTIGVARRM  TAYKRNHMIL360
KDLDWLIDIA  NDFNGLQIVF  SGKAHPLDGE  GKAIIKEIFD  AKDYVKSKTD  KLKIAFIENY420
DMYKAKIIIS  GVDIWLNTPQ  RPLEASGTSG  IKAALNGVPS  FSVLDGWWIE  GCMENVNGWS480
IGKKTSWEDI  DVEPEWDPDE  IHDLYNKLRY  IILPTYYDSF  GKYVSVMKMS  VATVSTYFNT540
NRMVMEYITK  LYLKNTLAV559

Predicted 3D structure by AlphaFold2 with pLDDT = 94.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(162-492)

MIAYFVMECG  IEPYIPTYSG  GLGVLAGDTL  QSLADLKVPS  VGVTILWRKG  YTSQHLTAHG60
AQTDFPQTWD  PSKYLKPLDI  KIKIPVNGQD  IYVTAWKYDM  VGISGHVVPV  LFLDTNLKEN120
QPEIRQIFDR  LYLAQGKDRM  LQEIIFGVGG  YELLKVLGYK  IMVYHINESH  SAFLTIGLLK180
DLQDIEKVRD  RVVFVTHTPV  AAAFDKFPID  DVKTYLKDYI  KDTNMEDLFD  HDQEFNLSWI240
SLKASRTVAA  VSRKHKYVSE  GIFEGYKLEY  VTNGVHHIRW  ASPHHKKLYT  EFIRGWEEDP300
SLLRQITNVP  DQIFIQAHQK  AKEDLIDLVN  SQTDASFSRD  WFTIGVARRM  TAYKRNHMIL360
KDLDWLIDIA  NDFNGLQIVF  SGKAHPLDGE  GKAIIKEIFD  AKDYVKSKTD  KLKIAFIENY420
DMYKAKIIIS  GVDIWLNTPQ  RPLEASGTSG  IKAALNGVPS  FSVLDGWWIE  GCMENVNGWS480
IGKKTSWEDI  DVEPEWDPDE  IHDLYNKLRY  IILPTYYDSF  GKYVSVMKMS  VATVSTYFNT540
NRMVMEYITK  LYLKNTLAV559

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help