CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AGA78661.1

Basic Information

GenBank IDAGA78661.1
FamilyGH92
Sequence Length744
UniProt IDL0G0Y1(100,100)Download
Average pLDDT?94.79
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID926556
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusEchinicola
SpeciesEchinicola vietnamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGLAIGLGAV  VSGCKEQAPS  DQDKDRVPEA  DLVEYVNPYI  GSGGHGHVFV  GANVPFGGVQ60
LGPVNLTEGW  DWCSGYHYSD  STIIGFAHTH  LSGTGIGDLG  DVLVMPVVGE  VSVAKGVPEQ120
PETGYFSYFD  HENEVVEAGY  YAVQLDRYDV  YAELTATSRA  GFHQYTFPES  DESKLLFNLK180
QGIGWDVPTE  THIELVNDTT  LTGYRFSKGW  AKDQKLYFAA  KLSKPVVSFE  VFDENEPVAG240
KSLTGKEVKA  LMEFATTADE  KVLLKVGISP  VSVVNAMDNL  KEEIPHWDFK  RTVADAKSNW300
NHELNKIQVE  MDDEVEMTKF  YTALYHTMIA  PSVFNDHNGD  YAGADGKVRN  DTTFTNLTTF360
SLWDIYRGCS  PLYTIFQQNR  MEDIVKSMLK  IYEQQGKLPV  WHLVGNETNT  MPGYSAVPIV420
VDAYLKGIPM  DTVLAYEAVK  ASAMRDELGL  DKVKELGYIP  ADGEVESVSK  GLEYALSDWC480
IAQMAKGFGA  QEDVAYFSKR  GKYYQHYFDP  NVGFMRGRIA  DNEWRKPFSP  FTSIHMKGDF540
TEGNAWQYTW  LVPQDVEGLV  ELLGGREAFI  SKLDSLFLVE  GDMGEEASND  ITGLVGQYAQ600
GNEPSHHVTY  LYGYVGQSHK  TAEKVRYILK  NLYANDPDGL  SGNEDVGQMS  AWLVLSSLGF660
YPVEPAGGKY  VWGSPTVNNA  TIRMDNGKTL  HLTVKGNSEE  NIYIQNITFN  GKPYSSQFLM720
HEDLLKGGEI  VVEMGSEAAE  HRLK744

Predicted 3D structure by AlphaFold2 with pLDDT = 94.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH92(247-737)

MGLAIGLGAV  VSGCKEQAPS  DQDKDRVPEA  DLVEYVNPYI  GSGGHGHVFV  GANVPFGGVQ60
LGPVNLTEGW  DWCSGYHYSD  STIIGFAHTH  LSGTGIGDLG  DVLVMPVVGE  VSVAKGVPEQ120
PETGYFSYFD  HENEVVEAGY  YAVQLDRYDV  YAELTATSRA  GFHQYTFPES  DESKLLFNLK180
QGIGWDVPTE  THIELVNDTT  LTGYRFSKGW  AKDQKLYFAA  KLSKPVVSFE  VFDENEPVAG240
KSLTGKEVKA  LMEFATTADE  KVLLKVGISP  VSVVNAMDNL  KEEIPHWDFK  RTVADAKSNW300
NHELNKIQVE  MDDEVEMTKF  YTALYHTMIA  PSVFNDHNGD  YAGADGKVRN  DTTFTNLTTF360
SLWDIYRGCS  PLYTIFQQNR  MEDIVKSMLK  IYEQQGKLPV  WHLVGNETNT  MPGYSAVPIV420
VDAYLKGIPM  DTVLAYEAVK  ASAMRDELGL  DKVKELGYIP  ADGEVESVSK  GLEYALSDWC480
IAQMAKGFGA  QEDVAYFSKR  GKYYQHYFDP  NVGFMRGRIA  DNEWRKPFSP  FTSIHMKGDF540
TEGNAWQYTW  LVPQDVEGLV  ELLGGREAFI  SKLDSLFLVE  GDMGEEASND  ITGLVGQYAQ600
GNEPSHHVTY  LYGYVGQSHK  TAEKVRYILK  NLYANDPDGL  SGNEDVGQMS  AWLVLSSLGF660
YPVEPAGGKY  VWGSPTVNNA  TIRMDNGKTL  HLTVKGNSEE  NIYIQNITFN  GKPYSSQFLM720
HEDLLKGGEI  VVEMGSEAAE  HRLK744

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help