CAZyme3D

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Entry ID

Information for CAZyme ID: AGA58870.1

Basic Information

GenBank IDAGA58870.1
FamilyGH8
Sequence Length386
UniProt IDL0EI92(100,100)Download
Average pLDDT?96.75
CAZy50 ID95315
CAZy50 RepNo, BDF46861.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID717605
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusThermobacillus
SpeciesThermobacillus composti

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTEAKQGAFH  TGQYRNVIAE  YGLASEQEAA  GRLQDTWDQL  FGEYGDHAET  RIYYEAGPDM60
GYLLDTGNLD  VRTEGMSYGM  MMAVQMDRKD  IFDRIWRWAM  TCMYMTEGEH  AGYFAWSCLP120
DGSRNSNGPA  PDGEEYFALA  LFFASHRWGD  GEGIFDYGRQ  ARDLLRTCLH  KGEDGVGRPM180
WNPDNKLIKF  IPNCEFTDPS  YHLPHFYELF  ALWAYPEDRA  FWREAAQASR  AFLKTACHPV240
TGLAPEYAFY  DGTPNHVRGF  GHFFSDSYRV  AANIGLDWEW  FRADPWNVKE  ANLIQAFFAD300
KDPADLRRYT  IAGEPFDEPA  LHPTGLIATN  AMASLAADGP  HARRAVELFW  RTPVRTGNRR360
YYDNCLYFFA  MLALTGNYRI  WMSSGS386

Predicted 3D structure by AlphaFold2 with pLDDT = 96.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(65-373)

MTEAKQGAFH  TGQYRNVIAE  YGLASEQEAA  GRLQDTWDQL  FGEYGDHAET  RIYYEAGPDM60
GYLLDTGNLD  VRTEGMSYGM  MMAVQMDRKD  IFDRIWRWAM  TCMYMTEGEH  AGYFAWSCLP120
DGSRNSNGPA  PDGEEYFALA  LFFASHRWGD  GEGIFDYGRQ  ARDLLRTCLH  KGEDGVGRPM180
WNPDNKLIKF  IPNCEFTDPS  YHLPHFYELF  ALWAYPEDRA  FWREAAQASR  AFLKTACHPV240
TGLAPEYAFY  DGTPNHVRGF  GHFFSDSYRV  AANIGLDWEW  FRADPWNVKE  ANLIQAFFAD300
KDPADLRRYT  IAGEPFDEPA  LHPTGLIATN  AMASLAADGP  HARRAVELFW  RTPVRTGNRR360
YYDNCLYFFA  MLALTGNYRI  WMSSGS386

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help